Variant report

Variant	rs2118257
Chromosome Location	chr4:147966066-147966067
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10519848	0.89[CHB][hapmap];0.80[CHD][hapmap];0.85[GIH][hapmap]
rs13118835	0.86[ASN][1000 genomes]
rs13150187	0.83[ASN][1000 genomes]
rs13151041	0.89[ASN][1000 genomes]
rs1437276	0.83[EUR][1000 genomes]
rs17472966	0.87[CHB][hapmap]
rs17576594	0.84[ASN][1000 genomes]
rs1992118	0.90[ASN][1000 genomes]
rs1992119	0.94[ASN][1000 genomes]
rs34344397	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3789147	0.84[ASN][1000 genomes]
rs6537445	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7660168	0.89[CHB][hapmap];0.82[CHD][hapmap];0.80[GIH][hapmap]
rs867	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880240	chr4:147905897-148032003	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1016598	chr4:147931134-148012064	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147965800-147970400	Weak transcription	Stomach Smooth Muscle	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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