Variant report

Variant	rs1992119
Chromosome Location	chr4:147968106-147968107
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10519848	1.00[CHB][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.84[JPT][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.88[EUR][1000 genomes]
rs13104820	0.85[MEX][hapmap]
rs13118835	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13120245	0.81[MEX][hapmap]
rs13150187	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13151041	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17472952	0.83[CHB][hapmap];0.80[EUR][1000 genomes]
rs17472966	1.00[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17576594	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1992118	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2118257	0.94[ASN][1000 genomes]
rs2357439	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34221140	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34344397	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35334988	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3789147	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3827595	0.81[MEX][hapmap]
rs55974445	0.88[EUR][1000 genomes]
rs56199987	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6855963	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7660168	1.00[CHB][hapmap];0.90[CHD][hapmap];0.83[GIH][hapmap];0.84[JPT][hapmap];0.82[MEX][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7664149	0.81[MEX][hapmap]
rs7668995	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7699439	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs867	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs974278	0.83[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880240	chr4:147905897-148032003	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1016598	chr4:147931134-148012064	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147965800-147970400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr4:147967800-147971800	Weak transcription	Fetal Kidney	kidney

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