Variant report

Variant	rs974278
Chromosome Location	chr4:147925900-147925901
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10519848	0.90[CHD][hapmap]
rs17472952	0.81[CEU][hapmap]
rs17472966	0.81[CEU][hapmap];0.83[ASN][1000 genomes]
rs2357439	0.83[ASN][1000 genomes]
rs28456274	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35334988	0.82[ASN][1000 genomes]
rs35430502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3827592	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6828944	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7660168	0.84[CEU][hapmap];0.93[CHD][hapmap];0.83[ASN][1000 genomes]
rs7668995	0.81[ASN][1000 genomes]
rs971805	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880240	chr4:147905897-148032003	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147923000-147926600	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr4:147923400-147926000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:147923400-147926000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr4:147925200-147926000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr4:147925200-147926000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr4:147925800-147926600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr4:147925800-147932600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr4:147925800-147932600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr4:147925800-147936600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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