Variant report

Variant	rs35334988
Chromosome Location	chr4:147924404-147924405
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10519848	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13118835	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13150187	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13151041	0.86[EUR][1000 genomes]
rs17472952	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17472966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17576594	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1992118	0.86[EUR][1000 genomes]
rs1992119	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2357439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34221140	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34344397	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34782747	0.82[AMR][1000 genomes]
rs35430502	0.83[ASN][1000 genomes]
rs35712144	0.86[AMR][1000 genomes]
rs3789147	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3827592	0.81[EUR][1000 genomes]
rs55974445	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56199987	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56317226	0.82[AMR][1000 genomes]
rs62329360	0.86[AMR][1000 genomes]
rs6828944	0.82[ASN][1000 genomes]
rs6855963	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs748828	0.82[AMR][1000 genomes]
rs7660168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7668995	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7678787	0.82[AMR][1000 genomes]
rs7699439	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs867	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs971805	0.82[ASN][1000 genomes]
rs974278	0.82[ASN][1000 genomes]
rs993759	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880240	chr4:147905897-148032003	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147913400-147925200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr4:147923000-147926600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr4:147923400-147926000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:147923400-147926000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr4:147923600-147925000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr4:147923600-147925800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr4:147923600-147925800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr4:147924000-147925200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr4:147924200-147925200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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