Variant report

Variant	rs7668995
Chromosome Location	chr4:147919278-147919279
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10519848	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13118835	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13120245	0.90[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13150187	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13151041	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1437265	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1437266	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17472952	0.82[CHB][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17472966	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17576594	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1992118	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1992119	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2004172	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2357439	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2884189	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34221140	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34344397	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34782747	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35334988	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35430502	0.82[ASN][1000 genomes]
rs35712144	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3789147	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3827595	0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55974445	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56199987	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56317226	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62329360	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62329362	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62329364	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6828944	0.81[ASN][1000 genomes]
rs6855963	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs714627	0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs748828	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7658558	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7660168	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7664149	0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7678787	0.90[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7680139	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7699439	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs867	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs882188	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs893231	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs969511	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs971805	0.81[ASN][1000 genomes]
rs974278	0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs993759	0.91[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880240	chr4:147905897-148032003	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3345265	chr4:147919010-147919335	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147913400-147925200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr4:147919200-147919600	Enhancers	GM12878-XiMat	blood
3	chr4:147919200-147919800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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