Variant report

Variant	rs3827595
Chromosome Location	chr4:147867307-147867308
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr4:147867111-147867339	MCF10A-Er-Src	breast:	n/a	n/a
2	MAFK	chr4:147867225-147867425	Hela-S3	cervix:	n/a	chr4:147867333-147867350
3	MAFF	chr4:147867188-147867444	K562	blood:	n/a	chr4:147867328-147867346
4	STAT3	chr4:147867172-147867371	MCF10A-Er-Src	breast:	n/a	chr4:147867257-147867268
5	SIN3A	chr4:147866605-147867401	H1-hESC	embryonic stem cell:	n/a	chr4:147866928-147866937
6	MXI1	chr4:147866878-147867374	GM12878	blood:	n/a	chr4:147867015-147867030
7	MAFF	chr4:147867163-147867532	HepG2	liver:	n/a	chr4:147867328-147867346
8	MAFK	chr4:147867149-147867524	HepG2	liver:	n/a	chr4:147867333-147867350
9	MAFK	chr4:147867115-147867501	K562	blood:	n/a	chr4:147867333-147867350
10	MAZ	chr4:147866738-147867416	IMR90	lung:	n/a	chr4:147866950-147866960
11	MXI1	chr4:147866398-147867892	SK-N-SH	brain:	n/a	chr4:147867015-147867030
12	MAFK	chr4:147867158-147867518	HepG2	liver:	n/a	chr4:147867333-147867350
13	MAFK	chr4:147867181-147867458	H1-hESC	embryonic stem cell:	n/a	chr4:147867333-147867350
14	POLR2A	chr4:147867035-147867363	U87	brain:	n/a	n/a
15	JUND	chr4:147866659-147867606	H1-hESC	embryonic stem cell:	n/a	n/a
16	MAFK	chr4:147867063-147867541	IMR90	lung:	n/a	chr4:147867333-147867350

Variant related genes	Relation type
TTC29	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10519848	0.95[CEU][hapmap];0.86[MEX][hapmap];0.80[TSI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13104820	0.81[CEU][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes]
rs13120245	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1437265	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1437266	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17472952	0.94[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2004172	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2884189	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34431124	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34470581	0.82[EUR][1000 genomes]
rs34782747	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35712144	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55974445	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56317226	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62329360	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62329362	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62329364	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6855963	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs714627	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs748828	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7658558	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7664149	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7668995	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7678787	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7680139	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7699439	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs882188	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs893231	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs969511	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs984695	0.82[EUR][1000 genomes]
rs993759	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147866200-147867400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:147866200-147868600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr4:147866400-147867400	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr4:147866400-147867400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
5	chr4:147866400-147867400	Active TSS	Brain Angular Gyrus	brain
6	chr4:147866400-147867400	Active TSS	Brain Anterior Caudate	brain
7	chr4:147866400-147867400	Active TSS	Brain Cingulate Gyrus	brain
8	chr4:147866400-147867400	Active TSS	Brain Hippocampus Middle	brain
9	chr4:147866400-147867400	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr4:147866400-147867400	Active TSS	Rectal Smooth Muscle	rectum
11	chr4:147866400-147867600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
12	chr4:147866400-147867600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr4:147866400-147867600	Flanking Active TSS	Primary hematopoietic stem cells	blood
14	chr4:147866400-147867600	Flanking Active TSS	Adipose Nuclei	Adipose
15	chr4:147866400-147868200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr4:147866600-147867400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
17	chr4:147866600-147867400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
18	chr4:147866600-147867400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr4:147866600-147867400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr4:147866600-147867400	Active TSS	H9 Cell Line	embryonic stem cell
21	chr4:147866600-147867400	Active TSS	HUES6 Cell Line	embryonic stem cell
22	chr4:147866600-147867400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr4:147866600-147867400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr4:147866600-147867400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
25	chr4:147866600-147867400	Flanking Active TSS	Liver	Liver
26	chr4:147866600-147867400	Active TSS	Duodenum Smooth Muscle	Duodenum
27	chr4:147866600-147867400	Active TSS	Lung	lung
28	chr4:147866600-147867400	Bivalent Enhancer	Small Intestine	intestine
29	chr4:147866600-147867400	Bivalent/Poised TSS	A549	lung
30	chr4:147866600-147867600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr4:147866600-147867600	Active TSS	Breast Myoepithelial Primary Cells	Breast
32	chr4:147866600-147867600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
33	chr4:147866600-147867600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
34	chr4:147866600-147867600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr4:147866600-147867600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr4:147866600-147867600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr4:147866600-147867600	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr4:147866600-147867600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
39	chr4:147866600-147867600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr4:147866600-147867600	Active TSS	Fetal Brain Female	brain
41	chr4:147866600-147867600	Flanking Active TSS	Fetal Thymus	thymus
42	chr4:147866600-147867600	Flanking Active TSS	Psoas Muscle	Psoas
43	chr4:147866600-147867600	Active TSS	Rectal Mucosa Donor 29	rectum
44	chr4:147866600-147867600	Active TSS	Right Ventricle	heart
45	chr4:147866600-147867600	Enhancers	Spleen	Spleen
46	chr4:147866600-147867600	Bivalent/Poised TSS	GM12878-XiMat	blood
47	chr4:147866600-147867600	Bivalent/Poised TSS	HepG2	liver
48	chr4:147866600-147867600	Bivalent/Poised TSS	HSMM	muscle
49	chr4:147866600-147867800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
50	chr4:147866600-147868000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood

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