Variant report

Variant	rs34782747
Chromosome Location	chr4:147890407-147890408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:15)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:15 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr4:147890280-147890430	NHLF	lung:	n/a	n/a
2	CTCF	chr4:147890400-147890550	HFF-Myc	foreskin:	n/a	n/a
3	CTCF	chr4:147890340-147890490	BE2_C	brain:	n/a	n/a
4	CTCF	chr4:147890320-147890470	HCPEpiC	choroid plexus:	n/a	n/a
5	SETDB1	chr4:147890143-147890540	U2OS	brain:	n/a	n/a
6	CTCF	chr4:147890380-147890530	HRPEpiC	eye:	n/a	n/a
7	CTCF	chr4:147890360-147890510	HBMEC	blood vessel:	n/a	n/a
8	CTCF	chr4:147890405-147890494	K562	blood:	n/a	n/a
9	CTCF	chr4:147890400-147890550	HMF	breast:	n/a	n/a
10	CTCF	chr4:147890360-147890510	WERI-Rb-1	eye:	n/a	n/a
11	CTCF	chr4:147890380-147890530	HPAF	blood vessel:	n/a	n/a
12	FOS	chr4:147890042-147890407	HUVEC	blood vessel:	n/a	n/a
13	CTCF	chr4:147890360-147890510	MCF-7	breast:	n/a	n/a
14	CTCF	chr4:147890380-147890530	HAc	cerebellar:	n/a	n/a
15	CTCF	chr4:147890340-147890490	HCFaa	heart:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:147888276..147890425-chr4:147892906..147895902,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000248346	TF binding region
ENSG00000248346	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10519848	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13104820	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13120245	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1437265	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1437266	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17472952	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17472966	0.82[AMR][1000 genomes]
rs2004172	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2357439	0.82[AMR][1000 genomes]
rs2884189	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34221140	0.80[AMR][1000 genomes]
rs34431124	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34470581	0.82[EUR][1000 genomes]
rs34764961	0.81[AMR][1000 genomes]
rs35168292	0.81[AMR][1000 genomes]
rs35334988	0.82[AMR][1000 genomes]
rs35712144	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3827595	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55974445	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56199987	0.82[AMR][1000 genomes]
rs56317226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62328057	0.81[AMR][1000 genomes]
rs62329360	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62329362	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62329364	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6855963	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs714627	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs748828	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7658558	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7660168	0.82[AMR][1000 genomes]
rs7664149	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7668995	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7678787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7680139	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7699439	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs882188	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs893231	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs969511	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs984695	0.82[EUR][1000 genomes]
rs993759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1826357	chr4:147876484-147900981	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147889400-147890800	Enhancers	NH-A	brain
2	chr4:147889800-147890800	Enhancers	HUVEC	blood vessel

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