Variant report

Variant	rs62328057
Chromosome Location	chr4:147853218-147853219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13104820	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs13138511	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1816596	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34431124	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs34470581	0.88[AFR][1000 genomes]
rs34764961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34782747	0.81[AMR][1000 genomes]
rs35168292	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35712144	0.81[AMR][1000 genomes]
rs3810844	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56317226	0.81[AMR][1000 genomes]
rs62329360	0.81[AMR][1000 genomes]
rs748828	0.81[AMR][1000 genomes]
rs7678787	0.81[AMR][1000 genomes]
rs984696	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs993759	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2456671	chr4:147852567-147853859	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147851600-147853600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr4:147851800-147853400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr4:147852200-147853600	Enhancers	Primary hematopoietic stem cells	blood
4	chr4:147852200-147853600	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr4:147852600-147853400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr4:147852800-147853400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:147853000-147853600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:147853200-147853800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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