Variant report

Variant	rs748828
Chromosome Location	chr4:147879993-147879994
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10519848	0.95[CEU][hapmap];0.90[MEX][hapmap];0.80[TSI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13104820	0.81[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13120245	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1437265	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1437266	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17472952	0.94[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17472966	0.82[AMR][1000 genomes]
rs2004172	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2357439	0.82[AMR][1000 genomes]
rs2884189	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34221140	0.80[AMR][1000 genomes]
rs34431124	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34470581	0.82[EUR][1000 genomes]
rs34764961	0.81[AMR][1000 genomes]
rs34782747	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35168292	0.81[AMR][1000 genomes]
rs35334988	0.82[AMR][1000 genomes]
rs35712144	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3827595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55974445	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56199987	0.82[AMR][1000 genomes]
rs56317226	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62328057	0.81[AMR][1000 genomes]
rs62329360	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62329362	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62329364	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6855963	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs714627	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7658558	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7660168	0.82[AMR][1000 genomes]
rs7664149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7668995	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7678787	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7680139	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7699439	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs882188	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs893231	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs969511	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs984695	0.82[EUR][1000 genomes]
rs993759	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1826357	chr4:147876484-147900981	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147867600-147880600	Weak transcription	Pancreas	Pancrea
2	chr4:147876400-147880000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:147877600-147882600	Enhancers	Hela-S3	cervix
4	chr4:147878600-147880800	Weak transcription	HMEC	breast
5	chr4:147879000-147880600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr4:147879200-147880400	Weak transcription	NH-A	brain
7	chr4:147879200-147880600	Weak transcription	Osteobl	bone
8	chr4:147879200-147880800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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