Variant report

Variant	rs6855963
Chromosome Location	chr4:147896185-147896186
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10519848	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13118835	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13120245	0.90[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13150187	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13151041	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1437265	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1437266	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17472952	0.88[CHB][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17472966	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17576594	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1992118	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1992119	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2004172	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2357439	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2884189	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34221140	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34344397	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34782747	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35334988	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35712144	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3789147	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3827595	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55974445	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56199987	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56317226	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62329360	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62329362	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62329364	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6828944	0.80[ASN][1000 genomes]
rs714627	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs748828	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7658558	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7660168	1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7664149	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7668995	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7678787	0.90[CEU][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7680139	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7699439	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs867	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs882188	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs893231	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs969511	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs993759	0.91[CEU][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1826357	chr4:147876484-147900981	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147895000-147898400	Enhancers	Primary hematopoietic stem cells	blood
2	chr4:147895600-147897000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr4:147895600-147898000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr4:147895600-147898200	Enhancers	Fetal Thymus	thymus
5	chr4:147895600-147898200	Enhancers	Thymus	Thymus
6	chr4:147895600-147899000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:147896000-147896400	Enhancers	HUVEC	blood vessel

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