Variant report

Variant	rs55974445
Chromosome Location	chr4:147893585-147893586
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:147893029-147893775	H1-neurons	neurons:	n/a	n/a
2	POLR2A	chr4:147892953-147893716	H1-neurons	neurons:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:147891557..147893991-chr4:148019262..148022234,2	K562	blood:

Variant related genes	Relation type
ENSG00000248346	TF binding region

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10519848	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13118835	0.88[EUR][1000 genomes]
rs13120245	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13150187	0.85[EUR][1000 genomes]
rs13151041	0.87[EUR][1000 genomes]
rs1437265	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1437266	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17472952	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17472966	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17576594	0.88[EUR][1000 genomes]
rs1992118	0.87[EUR][1000 genomes]
rs1992119	0.88[EUR][1000 genomes]
rs2004172	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2357439	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2884189	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34221140	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34344397	0.88[EUR][1000 genomes]
rs34782747	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35334988	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35712144	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3789147	0.84[EUR][1000 genomes]
rs3827595	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56199987	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56317226	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62329360	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62329362	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62329364	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6855963	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs714627	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs748828	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7658558	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7660168	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7664149	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7668995	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7678787	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7680139	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7699439	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs867	0.83[EUR][1000 genomes]
rs882188	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs893231	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs969511	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs993759	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1826357	chr4:147876484-147900981	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3414711	chr4:147891502-147894100	Inactive region	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3436739	chr4:147891527-147894075	Inactive region	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links