Variant report

Variant	rs3827592
Chromosome Location	chr4:147948150-147948151
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10519848	0.80[CHD][hapmap];0.88[GIH][hapmap];0.83[TSI][hapmap]
rs13118835	0.83[ASN][1000 genomes]
rs13150187	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13151041	0.80[ASN][1000 genomes]
rs17472952	0.88[CEU][hapmap]
rs17472966	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs17576594	0.82[ASN][1000 genomes]
rs2357439	0.81[EUR][1000 genomes]
rs28456274	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35334988	0.81[EUR][1000 genomes]
rs35430502	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3789147	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56199987	0.82[EUR][1000 genomes]
rs6828944	0.81[ASN][1000 genomes]
rs7660168	0.92[CEU][hapmap];0.83[CHD][hapmap];0.93[GIH][hapmap];0.86[TSI][hapmap];0.81[EUR][1000 genomes]
rs867	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs969512	0.82[EUR][1000 genomes]
rs971805	0.81[ASN][1000 genomes]
rs974278	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap];0.88[MEX][hapmap];0.81[TSI][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880240	chr4:147905897-148032003	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv461676	chr4:147927227-147962432	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv595652	chr4:147927227-147962432	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1016598	chr4:147931134-148012064	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147946800-147953000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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