Variant report

Variant	rs2125125
Chromosome Location	chr3:142600087-142600088
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:142594109..142596464-chr3:142599857..142601497,2	K562	blood:
2	chr3:142598162..142600736-chr3:142605748..142608865,3	K562	blood:
3	chr3:142598161..142600089-chr3:142601646..142603770,3	K562	blood:
4	chr3:142596280..142600736-chr3:142602719..142608865,7	K562	blood:
5	chr3:142598080..142600621-chr3:142609257..142610987,2	K562	blood:

Variant related genes	Relation type
ENSG00000163710	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1036691	0.85[EUR][1000 genomes]
rs1457684	0.81[CEU][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1463559	0.85[EUR][1000 genomes]
rs2581619	0.81[CEU][hapmap];0.90[GIH][hapmap];0.81[JPT][hapmap];0.84[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs2581620	0.81[CEU][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs2581629	0.85[EUR][1000 genomes]
rs2581635	0.86[EUR][1000 genomes]
rs2581636	0.81[CEU][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2581637	0.81[CEU][hapmap];0.95[GIH][hapmap];0.88[JPT][hapmap];0.94[MEX][hapmap];0.96[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2608070	0.81[CEU][hapmap];0.93[GIH][hapmap];0.88[JPT][hapmap];0.89[MEX][hapmap];0.96[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2608078	0.85[EUR][1000 genomes]
rs2608079	0.85[EUR][1000 genomes]
rs2707973	0.81[CEU][hapmap];0.90[GIH][hapmap];0.83[JPT][hapmap];0.84[MEX][hapmap];0.96[TSI][hapmap];0.87[EUR][1000 genomes]
rs2707975	0.81[CEU][hapmap];0.90[GIH][hapmap];0.83[JPT][hapmap];0.96[TSI][hapmap];0.87[EUR][1000 genomes]
rs2707983	0.81[CEU][hapmap];0.95[GIH][hapmap];0.88[JPT][hapmap];0.84[MEX][hapmap];0.96[TSI][hapmap];0.91[EUR][1000 genomes]
rs2707985	0.93[CEU][hapmap];0.92[CHB][hapmap];0.91[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2707991	0.85[EUR][1000 genomes]
rs2707996	0.85[EUR][1000 genomes]
rs4683435	0.85[EUR][1000 genomes]
rs6778732	0.87[EUR][1000 genomes]
rs7648216	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877562	chr3:142573789-142846370	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142583000-142605000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:142586000-142606600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:142590600-142606000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:142596400-142605400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:142599400-142603800	Weak transcription	Adipose Nuclei	Adipose
6	chr3:142599600-142604000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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