Variant report

Variant	rs2608079
Chromosome Location	chr3:142624512-142624513
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:142547592..142548148-chr3:142624035..142624538,2	MCF-7	breast:
2	chr3:142547227..142548190-chr3:142623907..142624526,2	MCF-7	breast:
3	chr3:142624216..142625752-chr3:142627403..142630307,2	K562	blood:
4	chr3:142305389..142306193-chr3:142623757..142624589,2	K562	blood:
5	chr3:142623378..142625294-chr3:142630641..142632428,2	MCF-7	breast:
6	chr3:142547606..142548431-chr3:142623663..142624603,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1036691	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1457684	0.97[EUR][1000 genomes]
rs1457685	0.83[EUR][1000 genomes]
rs1463559	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2125125	0.85[EUR][1000 genomes]
rs2581619	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2581620	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2581626	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2581629	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2581635	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2581636	0.94[EUR][1000 genomes]
rs2581637	0.95[EUR][1000 genomes]
rs2608070	0.95[EUR][1000 genomes]
rs2608075	0.83[EUR][1000 genomes]
rs2608078	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2619147	0.83[EUR][1000 genomes]
rs2707973	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2707975	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2707977	0.83[EUR][1000 genomes]
rs2707983	0.95[EUR][1000 genomes]
rs2707985	0.85[EUR][1000 genomes]
rs2707991	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2707996	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2707997	0.84[EUR][1000 genomes]
rs4683435	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6778732	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7648216	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs893885	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9824548	0.83[EUR][1000 genomes]
rs984593	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877562	chr3:142573789-142846370	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142618000-142628000	Weak transcription	Aorta	Aorta
2	chr3:142622600-142624600	Enhancers	Stomach Mucosa	stomach
3	chr3:142623200-142624600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:142623200-142624600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:142623400-142624600	Enhancers	NHDF-Ad	bronchial
6	chr3:142623400-142624800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr3:142623400-142624800	Enhancers	A549	lung
8	chr3:142623400-142630200	Weak transcription	Left Ventricle	heart
9	chr3:142623800-142624600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:142623800-142626600	Weak transcription	Fetal Heart	heart
11	chr3:142623800-142628400	Weak transcription	NH-A	brain
12	chr3:142624000-142627200	Weak transcription	Placenta	Placenta
13	chr3:142624000-142628200	Weak transcription	Right Atrium	heart
14	chr3:142624000-142631200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr3:142624200-142625200	Weak transcription	K562	blood
16	chr3:142624200-142635000	Weak transcription	Osteobl	bone

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