Variant report
| Variant | rs1457685 |
|---|---|
| Chromosome Location | chr3:142645883-142645884 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs1036691 | 0.83[EUR][1000 genomes] |
| rs1457684 | 0.81[CHB][hapmap];0.81[EUR][1000 genomes] |
| rs1463559 | 0.83[EUR][1000 genomes] |
| rs2581619 | 0.94[CHB][hapmap];0.83[EUR][1000 genomes] |
| rs2581620 | 0.94[CHB][hapmap];0.83[EUR][1000 genomes] |
| rs2581626 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs2581629 | 0.83[EUR][1000 genomes] |
| rs2581635 | 0.82[EUR][1000 genomes] |
| rs2581637 | 0.81[CHB][hapmap] |
| rs2608070 | 0.80[CHB][hapmap] |
| rs2608075 | 1.00[CHB][hapmap];0.88[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2608078 | 0.83[EUR][1000 genomes] |
| rs2608079 | 0.83[EUR][1000 genomes] |
| rs2619147 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2707973 | 0.81[CHB][hapmap];0.81[EUR][1000 genomes] |
| rs2707975 | 0.81[CHB][hapmap];0.81[EUR][1000 genomes] |
| rs2707977 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2707983 | 0.81[CHB][hapmap] |
| rs2707991 | 0.83[EUR][1000 genomes] |
| rs2707996 | 0.83[EUR][1000 genomes] |
| rs2707997 | 0.83[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs4683435 | 0.83[EUR][1000 genomes] |
| rs6778732 | 0.81[EUR][1000 genomes] |
| rs893885 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs9824548 | 1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs984593 | 1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs984594 | 1.00[CHB][hapmap];0.89[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv877562 | chr3:142573789-142846370 | Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 27 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:142643600-142647200 | Enhancers | HepG2 | liver |
| 2 | chr3:142645400-142648200 | Flanking Active TSS | Liver | Liver |
