Variant report

Variant	rs893885
Chromosome Location	chr3:142634888-142634889
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1036691	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1457684	0.88[CEU][hapmap];0.81[CHB][hapmap];0.81[EUR][1000 genomes]
rs1457685	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1463559	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2581619	0.87[ASW][hapmap];0.88[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.82[JPT][hapmap];0.94[MEX][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2581620	0.88[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2581626	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2581629	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2581635	0.83[EUR][1000 genomes]
rs2581636	0.87[CEU][hapmap]
rs2581637	0.88[CEU][hapmap];0.81[CHB][hapmap];0.83[MEX][hapmap]
rs2608070	0.88[CEU][hapmap];0.80[CHB][hapmap]
rs2608075	0.93[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2608078	0.84[EUR][1000 genomes]
rs2608079	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2619147	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.84[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2707973	0.88[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.94[MEX][hapmap];0.82[EUR][1000 genomes]
rs2707975	0.88[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.88[MEX][hapmap];0.82[EUR][1000 genomes]
rs2707977	0.94[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2707983	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs2707991	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2707996	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2707997	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4683435	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6778732	0.82[EUR][1000 genomes]
rs9824548	0.94[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs984593	0.94[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs984594	0.94[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877562	chr3:142573789-142846370	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142624200-142635000	Weak transcription	Osteobl	bone
2	chr3:142629600-142635200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:142632200-142635000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr3:142632600-142635600	Weak transcription	Adipose Nuclei	Adipose
5	chr3:142633800-142635400	Weak transcription	K562	blood
6	chr3:142634400-142636000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:142634600-142635400	Enhancers	Placenta	Placenta
8	chr3:142634800-142635400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:142634800-142635400	Enhancers	NHDF-Ad	bronchial
10	chr3:142634800-142635800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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