Variant report

Variant	rs213161
Chromosome Location	chr15:57235955-57235956
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1430821	1.00[CEU][hapmap];0.83[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1542508	1.00[CEU][hapmap];0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs1628067	1.00[YRI][hapmap]
rs1642932	1.00[CEU][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1642933	0.87[AFR][1000 genomes]
rs1642938	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1652734	0.95[AFR][1000 genomes]
rs1652735	1.00[CEU][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1652736	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1657925	1.00[AMR][1000 genomes]
rs16977246	0.86[YRI][hapmap]
rs1841692	0.86[YRI][hapmap]
rs2116064	1.00[CEU][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs213145	0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs213146	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs213149	1.00[YRI][hapmap]
rs213155	0.90[YRI][hapmap]
rs213157	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs213158	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs213159	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs213169	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2576928	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs2585084	1.00[CEU][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2585087	1.00[YRI][hapmap]
rs2585117	1.00[AMR][1000 genomes]
rs2585118	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs2593230	1.00[CEU][hapmap]
rs2703587	1.00[CEU][hapmap]
rs2703589	1.00[CEU][hapmap]
rs2703620	1.00[CEU][hapmap]
rs2733171	1.00[YRI][hapmap]
rs2733195	1.00[CEU][hapmap]
rs2733339	0.90[YRI][hapmap]
rs4494480	1.00[CEU][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs56235870	1.00[AMR][1000 genomes]
rs56683633	1.00[AMR][1000 genomes]
rs56804967	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57344548	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57849686	1.00[AMR][1000 genomes]
rs57968080	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58388376	1.00[AMR][1000 genomes]
rs59313491	1.00[AMR][1000 genomes]
rs604191	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7161894	1.00[CEU][hapmap];0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs7162421	1.00[AMR][1000 genomes]
rs7170742	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7175983	1.00[CEU][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs7180911	1.00[CEU][hapmap];0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs73411246	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413325	1.00[AMR][1000 genomes]
rs73413333	1.00[AMR][1000 genomes]
rs73413352	1.00[AMR][1000 genomes]
rs73413365	1.00[AMR][1000 genomes]
rs74018446	1.00[AMR][1000 genomes]
rs74018485	1.00[AMR][1000 genomes]
rs8025829	1.00[CEU][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs8037469	1.00[CEU][hapmap]
rs8043301	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv904250	chr15:57225766-57294085	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1052052	chr15:57232111-57344561	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv542394	chr15:57232111-57344561	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57212400-57256000	Weak transcription	Pancreas	Pancrea
2	chr15:57212600-57241000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:57213200-57256000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr15:57216400-57241800	Weak transcription	Fetal Brain Male	brain
5	chr15:57220400-57236400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:57222600-57250200	Weak transcription	NH-A	brain
7	chr15:57222800-57240800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr15:57222800-57255000	Weak transcription	HMEC	breast
9	chr15:57223000-57236800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr15:57223200-57240400	Weak transcription	Aorta	Aorta
11	chr15:57224400-57238000	Weak transcription	Fetal Lung	lung
12	chr15:57224600-57248600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr15:57225000-57239400	Weak transcription	Left Ventricle	heart
14	chr15:57225000-57244200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr15:57225000-57249000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr15:57225200-57238000	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr15:57226400-57242000	Weak transcription	HUVEC	blood vessel
18	chr15:57227000-57249800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr15:57227200-57236800	Weak transcription	A549	lung
20	chr15:57227600-57236000	Weak transcription	Psoas Muscle	Psoas
21	chr15:57227600-57260600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:57228000-57237600	Weak transcription	Primary B cells from peripheral blood	blood
23	chr15:57228000-57237600	Weak transcription	Fetal Intestine Large	intestine
24	chr15:57228000-57238000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr15:57228000-57242400	Weak transcription	Fetal Intestine Small	intestine
26	chr15:57228200-57236800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr15:57228200-57238000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr15:57228200-57260600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr15:57228400-57236800	Weak transcription	Primary B cells from cord blood	blood
30	chr15:57228400-57237600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr15:57229200-57237400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr15:57229200-57237600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr15:57229400-57255800	Weak transcription	Fetal Stomach	stomach
34	chr15:57229800-57237800	Weak transcription	Fetal Muscle Leg	muscle
35	chr15:57231200-57238000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr15:57231200-57240800	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr15:57232000-57236600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr15:57232000-57256000	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr15:57232200-57238000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr15:57232200-57238000	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr15:57232200-57238000	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr15:57232200-57238000	Weak transcription	NHDF-Ad	bronchial
43	chr15:57232200-57238200	Weak transcription	Small Intestine	intestine
44	chr15:57232200-57240000	Weak transcription	NHLF	lung
45	chr15:57232400-57236000	Weak transcription	Right Atrium	heart
46	chr15:57232400-57238000	Weak transcription	Adipose Nuclei	Adipose
47	chr15:57232600-57239200	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr15:57233000-57250200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr15:57233200-57236200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr15:57233200-57238800	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links