Variant report

Variant	rs8025829
Chromosome Location	chr15:57326020-57326021
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57325288..57327004-chr15:57330879..57332478,2	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1020888	1.00[JPT][hapmap];0.89[YRI][hapmap]
rs13329610	1.00[JPT][hapmap]
rs1430821	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1542508	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs1628067	0.90[YRI][hapmap]
rs1642932	1.00[CEU][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1642938	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1652734	0.81[ASN][1000 genomes]
rs1652735	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1652736	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1657925	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs16977246	1.00[JPT][hapmap];0.95[YRI][hapmap]
rs16977269	1.00[JPT][hapmap];0.95[YRI][hapmap]
rs1841692	1.00[JPT][hapmap];0.95[YRI][hapmap]
rs2011551	1.00[JPT][hapmap];0.89[YRI][hapmap]
rs2116064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs213145	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs213146	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs213147	0.91[EUR][1000 genomes]
rs213149	0.90[YRI][hapmap]
rs213155	0.81[YRI][hapmap]
rs213157	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs213158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs213159	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs213161	1.00[CEU][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs213169	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2566843	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs2576928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2585084	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2585087	0.90[YRI][hapmap]
rs2585110	0.89[YRI][hapmap];0.87[ASN][1000 genomes]
rs2585117	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2585118	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2593230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2593246	1.00[JPT][hapmap]
rs2615233	1.00[JPT][hapmap]
rs2703587	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2703589	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2703620	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2733171	0.90[YRI][hapmap]
rs2733194	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2733195	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2733339	1.00[JPT][hapmap]
rs4494480	1.00[CEU][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4774911	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs4774912	1.00[JPT][hapmap]
rs56235870	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56683633	1.00[AMR][1000 genomes]
rs56804967	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57344548	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57452003	0.87[ASN][1000 genomes]
rs57813422	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57849686	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57968080	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58388376	1.00[AMR][1000 genomes]
rs59313491	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60268394	0.87[ASN][1000 genomes]
rs604191	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6493902	1.00[JPT][hapmap]
rs6493904	0.94[YRI][hapmap]
rs7161894	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7162421	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7170742	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7175983	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7180911	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AMR][1000 genomes]
rs73411246	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73413325	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73413333	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73413352	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73413365	1.00[AMR][1000 genomes]
rs74018446	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs74018485	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs8037469	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040423	0.87[ASN][1000 genomes]
rs8040557	1.00[JPT][hapmap];0.95[YRI][hapmap]
rs8043301	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1052052	chr15:57232111-57344561	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv542394	chr15:57232111-57344561	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv904251	chr15:57241970-57575916	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57308000-57328000	Weak transcription	Gastric	stomach
2	chr15:57309400-57334600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr15:57311000-57347000	Weak transcription	Fetal Intestine Large	intestine
4	chr15:57315600-57328200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr15:57315600-57328600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr15:57316400-57328200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr15:57316400-57345400	Weak transcription	Fetal Intestine Small	intestine
8	chr15:57316600-57327800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr15:57317600-57326200	Weak transcription	Esophagus	oesophagus
10	chr15:57318600-57331000	Weak transcription	Fetal Kidney	kidney
11	chr15:57318600-57335600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:57322400-57326600	Enhancers	Brain Angular Gyrus	brain
13	chr15:57322800-57326200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr15:57323600-57328000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr15:57323800-57327600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr15:57323800-57329400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr15:57324200-57327600	Weak transcription	Pancreas	Pancrea
18	chr15:57324200-57327800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr15:57324200-57328000	Weak transcription	Primary T cells from cord blood	blood
20	chr15:57324200-57328200	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr15:57324200-57328200	Weak transcription	HSMMtube	muscle
22	chr15:57324200-57328400	Weak transcription	Primary hematopoietic stem cells	blood
23	chr15:57324200-57328600	Weak transcription	GM12878-XiMat	blood
24	chr15:57324200-57329400	Weak transcription	Primary B cells from peripheral blood	blood
25	chr15:57324200-57331400	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr15:57324200-57331800	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr15:57324200-57332600	Weak transcription	Fetal Lung	lung
28	chr15:57324200-57337800	Weak transcription	Psoas Muscle	Psoas
29	chr15:57324200-57339000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr15:57324200-57341200	Weak transcription	Fetal Stomach	stomach
31	chr15:57324400-57326200	Enhancers	Brain Anterior Caudate	brain
32	chr15:57324400-57327400	Weak transcription	Fetal Thymus	thymus
33	chr15:57324400-57327400	Weak transcription	K562	blood
34	chr15:57324400-57327600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr15:57324400-57327600	Weak transcription	Thymus	Thymus
36	chr15:57324400-57327800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr15:57324400-57327800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr15:57324400-57327800	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr15:57324400-57327800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr15:57324400-57328200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr15:57324400-57328200	Weak transcription	Brain Germinal Matrix	brain
42	chr15:57324400-57328400	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr15:57324400-57328400	Weak transcription	Fetal Heart	heart
44	chr15:57324400-57328400	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr15:57324400-57332600	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr15:57324400-57338000	Weak transcription	HSMM	muscle
47	chr15:57324400-57341200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr15:57324400-57349200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr15:57324600-57327600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr15:57324600-57327800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links