Variant report

Variant	rs60268394
Chromosome Location	chr15:57167726-57167727
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs12101991	1.00[EUR][1000 genomes]
rs1430821	1.00[ASN][1000 genomes]
rs1642932	0.83[ASN][1000 genomes]
rs1642938	0.94[ASN][1000 genomes]
rs1652734	0.94[ASN][1000 genomes]
rs1652735	0.94[ASN][1000 genomes]
rs1652736	1.00[ASN][1000 genomes]
rs1657925	1.00[ASN][1000 genomes]
rs2116064	1.00[ASN][1000 genomes]
rs213145	1.00[ASN][1000 genomes]
rs213146	1.00[ASN][1000 genomes]
rs213157	1.00[ASN][1000 genomes]
rs213158	1.00[ASN][1000 genomes]
rs213159	1.00[ASN][1000 genomes]
rs213169	1.00[ASN][1000 genomes]
rs2566843	0.88[ASN][1000 genomes]
rs2576928	1.00[ASN][1000 genomes]
rs2585084	0.80[ASN][1000 genomes]
rs2585118	1.00[ASN][1000 genomes]
rs28647446	1.00[EUR][1000 genomes]
rs56235870	1.00[ASN][1000 genomes]
rs56764594	1.00[EUR][1000 genomes]
rs56804967	0.88[ASN][1000 genomes]
rs57344548	0.94[ASN][1000 genomes]
rs57452003	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57498481	1.00[EUR][1000 genomes]
rs57813422	0.94[ASN][1000 genomes]
rs57849686	1.00[ASN][1000 genomes]
rs57968080	0.94[ASN][1000 genomes]
rs58196676	1.00[EUR][1000 genomes]
rs59313491	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59958586	1.00[EUR][1000 genomes]
rs604191	1.00[ASN][1000 genomes]
rs7161894	1.00[ASN][1000 genomes]
rs7162421	0.86[ASN][1000 genomes]
rs7170742	1.00[ASN][1000 genomes]
rs7175930	1.00[EUR][1000 genomes]
rs7175983	0.81[ASN][1000 genomes]
rs7183661	1.00[EUR][1000 genomes]
rs73409238	1.00[EUR][1000 genomes]
rs73409264	0.93[AFR][1000 genomes]
rs73411246	1.00[ASN][1000 genomes]
rs73413325	0.87[ASN][1000 genomes]
rs73427621	1.00[EUR][1000 genomes]
rs73427643	1.00[EUR][1000 genomes]
rs74018446	1.00[ASN][1000 genomes]
rs8025829	0.87[ASN][1000 genomes]
rs8037469	0.87[ASN][1000 genomes]
rs8039759	1.00[EUR][1000 genomes]
rs8040423	1.00[ASN][1000 genomes]
rs8043301	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv457162	chr15:57083006-57225766	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv569577	chr15:57083006-57225766	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	esv3401951	chr15:57151709-57176189	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57162200-57178400	Weak transcription	Thymus	Thymus
2	chr15:57164200-57169400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr15:57164800-57178000	Weak transcription	Fetal Muscle Leg	muscle
4	chr15:57164800-57178200	Weak transcription	Fetal Brain Male	brain
5	chr15:57164800-57178400	Weak transcription	Brain Anterior Caudate	brain
6	chr15:57164800-57178600	Weak transcription	Brain Hippocampus Middle	brain

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