Variant report

Variant	rs56764594
Chromosome Location	chr15:57031076-57031077
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12101991	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28647446	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57452003	1.00[EUR][1000 genomes]
rs57498481	1.00[EUR][1000 genomes]
rs58196676	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59958586	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60268394	1.00[EUR][1000 genomes]
rs61279679	0.83[AFR][1000 genomes]
rs7175930	1.00[EUR][1000 genomes]
rs7183661	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409238	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73425619	0.80[AFR][1000 genomes]
rs73427621	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73427643	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8039759	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3387219	chr15:57027535-57031262	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57026200-57032400	Weak transcription	Pancreas	Pancrea
2	chr15:57027600-57033000	Enhancers	HepG2	liver
3	chr15:57027800-57032600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr15:57028800-57031400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr15:57029200-57032400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr15:57029800-57031400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:57029800-57031400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:57029800-57031600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr15:57029800-57032200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:57030000-57032200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr15:57030000-57032600	Enhancers	K562	blood
12	chr15:57030200-57031200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr15:57030200-57031400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr15:57030400-57031400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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