Variant report

Variant	rs8039759
Chromosome Location	chr15:57036138-57036139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12101991	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28647446	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56764594	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57452003	1.00[EUR][1000 genomes]
rs57498481	1.00[EUR][1000 genomes]
rs58196676	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59958586	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60268394	1.00[EUR][1000 genomes]
rs7175930	1.00[EUR][1000 genomes]
rs7183661	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409238	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73427621	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73427643	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57035000-57037200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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