Variant report

Variant	rs59958586
Chromosome Location	chr15:57104901-57104902
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12101991	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28647446	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56764594	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57452003	1.00[EUR][1000 genomes]
rs57498481	1.00[EUR][1000 genomes]
rs58196676	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60268394	1.00[EUR][1000 genomes]
rs7175930	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7183661	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409238	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73427621	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73427643	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8039759	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv457162	chr15:57083006-57225766	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv569577	chr15:57083006-57225766	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57100200-57114000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr15:57100400-57111600	Weak transcription	Thymus	Thymus
3	chr15:57102200-57109200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:57102600-57109800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr15:57103200-57106200	Weak transcription	Fetal Thymus	thymus
6	chr15:57104000-57105200	Enhancers	Fetal Lung	lung
7	chr15:57104000-57107400	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr15:57104200-57105000	Enhancers	Ovary	ovary
9	chr15:57104400-57105000	Enhancers	Left Ventricle	heart
10	chr15:57104600-57106000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr15:57104600-57106200	Weak transcription	Psoas Muscle	Psoas
12	chr15:57104600-57106400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr15:57104600-57108400	Weak transcription	Right Ventricle	heart
14	chr15:57104600-57109200	Weak transcription	Aorta	Aorta
15	chr15:57104800-57105000	Enhancers	Right Atrium	heart
16	chr15:57104800-57110600	Enhancers	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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