Variant report

Variant	rs28647446
Chromosome Location	chr15:57125528-57125529
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57118084..57120874-chr15:57123511..57126088,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10518861	1.00[AMR][1000 genomes]
rs12101705	1.00[AMR][1000 genomes]
rs12101991	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12903733	1.00[AMR][1000 genomes]
rs16977069	1.00[AMR][1000 genomes]
rs16977150	1.00[AMR][1000 genomes]
rs16977156	1.00[AMR][1000 genomes]
rs16977168	1.00[AMR][1000 genomes]
rs16977178	1.00[AMR][1000 genomes]
rs16977180	1.00[AMR][1000 genomes]
rs16977183	1.00[AMR][1000 genomes]
rs16977196	1.00[AMR][1000 genomes]
rs16977206	1.00[AMR][1000 genomes]
rs16977215	1.00[AMR][1000 genomes]
rs28494971	1.00[AMR][1000 genomes]
rs28637784	1.00[AMR][1000 genomes]
rs28648947	1.00[AMR][1000 genomes]
rs28669321	1.00[AMR][1000 genomes]
rs28682280	1.00[AMR][1000 genomes]
rs28710916	1.00[AMR][1000 genomes]
rs28760390	1.00[AMR][1000 genomes]
rs28790102	1.00[AMR][1000 genomes]
rs28807215	1.00[AMR][1000 genomes]
rs56764594	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57452003	1.00[EUR][1000 genomes]
rs57498481	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57637767	1.00[AMR][1000 genomes]
rs58196676	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59225036	1.00[AMR][1000 genomes]
rs59958586	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60268394	1.00[EUR][1000 genomes]
rs7175930	1.00[EUR][1000 genomes]
rs7183661	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409238	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73423633	1.00[AMR][1000 genomes]
rs73427621	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73427643	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8033640	1.00[AMR][1000 genomes]
rs8039759	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040713	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv457162	chr15:57083006-57225766	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv569577	chr15:57083006-57225766	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57110000-57138600	Weak transcription	Left Ventricle	heart
2	chr15:57113000-57130400	Weak transcription	Thymus	Thymus
3	chr15:57117000-57129000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:57122400-57125600	Enhancers	Adipose Nuclei	Adipose
5	chr15:57122600-57128000	Weak transcription	Brain Germinal Matrix	brain
6	chr15:57123200-57125800	Enhancers	Brain Cingulate Gyrus	brain
7	chr15:57124000-57130600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr15:57124600-57128000	Weak transcription	Fetal Thymus	thymus
9	chr15:57124800-57126200	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr15:57124800-57127600	Weak transcription	Fetal Heart	heart
11	chr15:57124800-57127800	Weak transcription	Ovary	ovary
12	chr15:57124800-57128000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:57124800-57128000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr15:57124800-57129000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr15:57124800-57129400	Weak transcription	NHDF-Ad	bronchial
16	chr15:57124800-57131800	Weak transcription	HMEC	breast
17	chr15:57125000-57125800	Enhancers	Stomach Smooth Muscle	stomach
18	chr15:57125000-57129000	Weak transcription	NH-A	brain
19	chr15:57125000-57129000	Weak transcription	Osteobl	bone
20	chr15:57125200-57127400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr15:57125200-57127600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr15:57125200-57127600	Weak transcription	Brain Substantia Nigra	brain
23	chr15:57125200-57127800	Weak transcription	Colon Smooth Muscle	Colon
24	chr15:57125200-57128000	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr15:57125200-57128000	Weak transcription	Fetal Muscle Leg	muscle
26	chr15:57125200-57129000	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr15:57125400-57127200	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr15:57125400-57127400	Weak transcription	Brain Anterior Caudate	brain
29	chr15:57125400-57127600	Weak transcription	Brain Hippocampus Middle	brain
30	chr15:57125400-57127800	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr15:57125400-57128000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr15:57125400-57129000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr15:57125400-57140400	Weak transcription	Brain Angular Gyrus	brain
34	chr15:57125400-57141000	Weak transcription	Fetal Lung	lung
35	chr15:57125400-57141000	Weak transcription	Fetal Muscle Trunk	muscle

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