Variant report

Variant	rs16977069
Chromosome Location	chr15:57051280-57051281
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57038395..57040361-chr15:57049426..57051956,2	K562	blood:
2	chr15:57020804..57022537-chr15:57050461..57051962,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10518861	1.00[AMR][1000 genomes]
rs12101705	1.00[AMR][1000 genomes]
rs12903733	1.00[AMR][1000 genomes]
rs16977150	1.00[AMR][1000 genomes]
rs16977156	1.00[AMR][1000 genomes]
rs16977168	1.00[AMR][1000 genomes]
rs28494971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28647446	1.00[AMR][1000 genomes]
rs28648947	1.00[AMR][1000 genomes]
rs28682280	1.00[AMR][1000 genomes]
rs28790102	1.00[AMR][1000 genomes]
rs28807215	1.00[AMR][1000 genomes]
rs57498481	1.00[AMR][1000 genomes]
rs57637767	1.00[AMR][1000 genomes]
rs59225036	1.00[AMR][1000 genomes]
rs73423633	1.00[AMR][1000 genomes]
rs73427621	1.00[AMR][1000 genomes]
rs8033640	1.00[AMR][1000 genomes]
rs8040713	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57049600-57051400	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr15:57050000-57051800	Weak transcription	Placenta	Placenta
3	chr15:57050200-57051400	Enhancers	NH-A	brain
4	chr15:57050200-57051600	Enhancers	HMEC	breast
5	chr15:57050200-57052600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr15:57050200-57052800	Enhancers	K562	blood
7	chr15:57050200-57052800	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr15:57050200-57053000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr15:57050200-57053200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr15:57050400-57051400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr15:57050400-57051600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:57050400-57051600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:57050400-57052600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr15:57050400-57053000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr15:57050400-57053000	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr15:57050400-57053000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr15:57050400-57053000	Enhancers	NHLF	lung
18	chr15:57050400-57053200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr15:57050400-57053200	Enhancers	HSMM	muscle
20	chr15:57050400-57053200	Enhancers	NHDF-Ad	bronchial
21	chr15:57050600-57052600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr15:57050600-57053000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr15:57050600-57053200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr15:57050800-57056200	Weak transcription	Primary T cells from cord blood	blood
25	chr15:57051000-57051400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr15:57051000-57051600	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr15:57051000-57051600	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr15:57051000-57052000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr15:57051000-57052200	Enhancers	Adipose Nuclei	Adipose
30	chr15:57051200-57051400	Enhancers	Primary B cells from cord blood	blood
31	chr15:57051200-57051400	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr15:57051200-57051600	Flanking Active TSS	HSMMtube	muscle
33	chr15:57051200-57052200	Flanking Active TSS	Osteobl	bone
34	chr15:57051200-57052600	Flanking Active TSS	NHEK	skin

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