Variant report

Variant	rs16977156
Chromosome Location	chr15:57234329-57234330
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12101705	1.00[AMR][1000 genomes]
rs12102211	0.89[AFR][1000 genomes]
rs12903733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16977069	1.00[AMR][1000 genomes]
rs16977150	1.00[AMR][1000 genomes]
rs16977168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16977178	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16977180	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16977183	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16977196	1.00[AMR][1000 genomes]
rs16977206	1.00[AMR][1000 genomes]
rs16977215	1.00[AMR][1000 genomes]
rs16977236	1.00[AMR][1000 genomes]
rs2733189	1.00[AMR][1000 genomes]
rs28393473	0.83[AFR][1000 genomes]
rs28464293	0.89[AFR][1000 genomes]
rs28493156	0.89[AFR][1000 genomes]
rs28494971	1.00[AMR][1000 genomes]
rs28637784	1.00[AMR][1000 genomes]
rs28647446	1.00[AMR][1000 genomes]
rs28648947	1.00[AMR][1000 genomes]
rs28669321	1.00[AMR][1000 genomes]
rs28682280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28710916	1.00[AMR][1000 genomes]
rs28718703	1.00[AMR][1000 genomes]
rs28760390	1.00[AMR][1000 genomes]
rs28790102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28807215	1.00[AMR][1000 genomes]
rs3111100	1.00[AMR][1000 genomes]
rs57498481	1.00[AMR][1000 genomes]
rs57637767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59225036	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427621	1.00[AMR][1000 genomes]
rs8030618	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv904250	chr15:57225766-57294085	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1052052	chr15:57232111-57344561	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv542394	chr15:57232111-57344561	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57212400-57256000	Weak transcription	Pancreas	Pancrea
2	chr15:57212600-57241000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:57213200-57256000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr15:57216400-57241800	Weak transcription	Fetal Brain Male	brain
5	chr15:57220400-57236400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:57222600-57250200	Weak transcription	NH-A	brain
7	chr15:57222800-57240800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr15:57222800-57255000	Weak transcription	HMEC	breast
9	chr15:57223000-57236800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr15:57223200-57240400	Weak transcription	Aorta	Aorta
11	chr15:57224400-57234400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr15:57224400-57235200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr15:57224400-57238000	Weak transcription	Fetal Lung	lung
14	chr15:57224600-57248600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr15:57225000-57239400	Weak transcription	Left Ventricle	heart
16	chr15:57225000-57244200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr15:57225000-57249000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr15:57225200-57238000	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr15:57226400-57235200	Weak transcription	Colon Smooth Muscle	Colon
20	chr15:57226400-57242000	Weak transcription	HUVEC	blood vessel
21	chr15:57226600-57234600	Weak transcription	Fetal Heart	heart
22	chr15:57227000-57249800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr15:57227200-57236800	Weak transcription	A549	lung
24	chr15:57227600-57235400	Weak transcription	Dnd41	blood
25	chr15:57227600-57236000	Weak transcription	Psoas Muscle	Psoas
26	chr15:57227600-57260600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr15:57227800-57235200	Weak transcription	NHEK	skin
28	chr15:57228000-57234600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr15:57228000-57235200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr15:57228000-57237600	Weak transcription	Primary B cells from peripheral blood	blood
31	chr15:57228000-57237600	Weak transcription	Fetal Intestine Large	intestine
32	chr15:57228000-57238000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr15:57228000-57242400	Weak transcription	Fetal Intestine Small	intestine
34	chr15:57228200-57235400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr15:57228200-57236800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr15:57228200-57238000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr15:57228200-57260600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr15:57228400-57236800	Weak transcription	Primary B cells from cord blood	blood
39	chr15:57228400-57237600	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr15:57229200-57235400	Weak transcription	Fetal Brain Female	brain
41	chr15:57229200-57237400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr15:57229200-57237600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr15:57229400-57255800	Weak transcription	Fetal Stomach	stomach
44	chr15:57229600-57234800	Weak transcription	Primary hematopoietic stem cells	blood
45	chr15:57229800-57237800	Weak transcription	Fetal Muscle Leg	muscle
46	chr15:57231200-57238000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr15:57231200-57240800	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr15:57231400-57234400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr15:57231400-57235000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr15:57231800-57234600	Enhancers	Thymus	Thymus

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