Variant report

Variant	rs3111100
Chromosome Location	chr15:57361633-57361634
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57355187..57357416-chr15:57359141..57362013,2	K562	blood:

Variant related genes	Relation type
ENSG00000140262	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12101705	1.00[AMR][1000 genomes]
rs12903733	1.00[AMR][1000 genomes]
rs16977150	1.00[AMR][1000 genomes]
rs16977156	1.00[AMR][1000 genomes]
rs16977168	1.00[AMR][1000 genomes]
rs16977178	1.00[AMR][1000 genomes]
rs16977180	1.00[AMR][1000 genomes]
rs16977183	1.00[AMR][1000 genomes]
rs16977196	1.00[AMR][1000 genomes]
rs16977206	1.00[AMR][1000 genomes]
rs16977215	1.00[AMR][1000 genomes]
rs16977236	1.00[AMR][1000 genomes]
rs2733189	1.00[AMR][1000 genomes]
rs28637784	1.00[AMR][1000 genomes]
rs28669321	1.00[AMR][1000 genomes]
rs28682280	1.00[AMR][1000 genomes]
rs28710916	1.00[AMR][1000 genomes]
rs28718703	1.00[AMR][1000 genomes]
rs28760390	1.00[AMR][1000 genomes]
rs28790102	1.00[AMR][1000 genomes]
rs28807215	1.00[AMR][1000 genomes]
rs57637767	1.00[AMR][1000 genomes]
rs59225036	1.00[AMR][1000 genomes]
rs8030618	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv904251	chr15:57241970-57575916	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57324600-57398600	Weak transcription	Fetal Muscle Leg	muscle
2	chr15:57336600-57371800	Weak transcription	K562	blood
3	chr15:57340200-57372600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr15:57343800-57363400	Weak transcription	Aorta	Aorta
5	chr15:57344600-57363600	Weak transcription	Right Atrium	heart
6	chr15:57346000-57374400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr15:57347000-57373400	Weak transcription	Fetal Intestine Small	intestine
8	chr15:57347600-57373000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr15:57347600-57373200	Weak transcription	Fetal Intestine Large	intestine
10	chr15:57348200-57361800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr15:57349800-57363800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr15:57349800-57366600	Weak transcription	Psoas Muscle	Psoas
13	chr15:57350200-57363800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr15:57350400-57362400	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr15:57350400-57372400	Weak transcription	Fetal Lung	lung
16	chr15:57350400-57373400	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr15:57350400-57374000	Weak transcription	Ovary	ovary
18	chr15:57351800-57371000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr15:57353200-57362800	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr15:57353400-57362600	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr15:57353400-57371000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr15:57353600-57362400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr15:57353600-57364200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr15:57353800-57362000	Weak transcription	HepG2	liver
25	chr15:57353800-57363800	Weak transcription	Colon Smooth Muscle	Colon
26	chr15:57353800-57364800	Weak transcription	HSMM	muscle
27	chr15:57353800-57373800	Weak transcription	Left Ventricle	heart
28	chr15:57353800-57406400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr15:57354200-57361800	Weak transcription	NHDF-Ad	bronchial
30	chr15:57354200-57384600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr15:57354600-57371600	Weak transcription	NH-A	brain
32	chr15:57355000-57374000	Weak transcription	Osteobl	bone
33	chr15:57355400-57365000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr15:57356000-57393400	Weak transcription	Thymus	Thymus
35	chr15:57356400-57364400	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr15:57356400-57370800	Weak transcription	Primary hematopoietic stem cells	blood
37	chr15:57356400-57371000	Weak transcription	Dnd41	blood
38	chr15:57356400-57371800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr15:57356400-57373800	Weak transcription	Fetal Muscle Trunk	muscle
40	chr15:57356600-57364800	Weak transcription	Fetal Kidney	kidney
41	chr15:57356600-57372000	Weak transcription	Primary B cells from cord blood	blood
42	chr15:57356800-57362200	Weak transcription	Brain Cingulate Gyrus	brain
43	chr15:57356800-57371200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr15:57357400-57362800	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr15:57357600-57362600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr15:57357600-57366600	Weak transcription	Primary B cells from peripheral blood	blood
47	chr15:57357600-57371600	Weak transcription	HUVEC	blood vessel
48	chr15:57358400-57362000	Weak transcription	Brain Angular Gyrus	brain
49	chr15:57359200-57362200	Enhancers	HMEC	breast
50	chr15:57359800-57363000	Enhancers	A549	lung

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