Variant report
| Variant | rs73427621 |
|---|---|
| Chromosome Location | chr15:57040709-57040710 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:57039206..57041236-chr15:57044908..57046817,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10518861 | 1.00[AMR][1000 genomes] |
| rs12101705 | 1.00[AMR][1000 genomes] |
| rs12101991 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12903733 | 1.00[AMR][1000 genomes] |
| rs16977069 | 1.00[AMR][1000 genomes] |
| rs16977150 | 1.00[AMR][1000 genomes] |
| rs16977156 | 1.00[AMR][1000 genomes] |
| rs16977168 | 1.00[AMR][1000 genomes] |
| rs28494971 | 1.00[AMR][1000 genomes] |
| rs28647446 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28648947 | 1.00[AMR][1000 genomes] |
| rs28682280 | 1.00[AMR][1000 genomes] |
| rs28790102 | 1.00[AMR][1000 genomes] |
| rs28807215 | 1.00[AMR][1000 genomes] |
| rs56764594 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57452003 | 1.00[EUR][1000 genomes] |
| rs57498481 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57637767 | 1.00[AMR][1000 genomes] |
| rs58196676 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59958586 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60268394 | 1.00[EUR][1000 genomes] |
| rs7175930 | 1.00[EUR][1000 genomes] |
| rs7183661 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73409238 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73423633 | 1.00[AMR][1000 genomes] |
| rs73427643 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8033640 | 1.00[AMR][1000 genomes] |
| rs8039759 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8040713 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3422474 | chr15:56867190-57244330 | Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 27 gene(s) | inside rSNPs | diseases |
| 2 | nsv569576 | chr15:57012816-57126917 | Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:57038800-57040800 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
