Variant report

Variant	rs58196676
Chromosome Location	chr15:57050749-57050750
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57038395..57040361-chr15:57049426..57051956,2	K562	blood:
2	chr15:57020804..57022537-chr15:57050461..57051962,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12101991	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28647446	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56764594	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57452003	1.00[EUR][1000 genomes]
rs57498481	1.00[EUR][1000 genomes]
rs59958586	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60268394	1.00[EUR][1000 genomes]
rs7175930	1.00[EUR][1000 genomes]
rs7183661	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409238	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73427621	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73427643	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8039759	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57042600-57051000	Weak transcription	Adipose Nuclei	Adipose
2	chr15:57047400-57051000	Weak transcription	Aorta	Aorta
3	chr15:57049600-57051400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr15:57050000-57051800	Weak transcription	Placenta	Placenta
5	chr15:57050200-57050800	Enhancers	Primary B cells from cord blood	blood
6	chr15:57050200-57051200	Enhancers	NHEK	skin
7	chr15:57050200-57051200	Enhancers	Osteobl	bone
8	chr15:57050200-57051400	Enhancers	NH-A	brain
9	chr15:57050200-57051600	Enhancers	HMEC	breast
10	chr15:57050200-57052600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr15:57050200-57052800	Enhancers	K562	blood
12	chr15:57050200-57052800	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr15:57050200-57053000	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr15:57050200-57053200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr15:57050400-57051400	Enhancers	Muscle Satellite Cultured Cells	--
16	chr15:57050400-57051600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr15:57050400-57051600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr15:57050400-57052600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr15:57050400-57053000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr15:57050400-57053000	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr15:57050400-57053000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr15:57050400-57053000	Enhancers	NHLF	lung
23	chr15:57050400-57053200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr15:57050400-57053200	Enhancers	HSMM	muscle
25	chr15:57050400-57053200	Enhancers	NHDF-Ad	bronchial
26	chr15:57050600-57051200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr15:57050600-57051200	Enhancers	HSMMtube	muscle
28	chr15:57050600-57052600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr15:57050600-57053000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr15:57050600-57053200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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