Variant report

Variant	rs2134622
Chromosome Location	chr11:19169508-19169509
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10500841	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10500842	0.94[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs10741761	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10766528	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10833064	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10833065	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11025021	0.87[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs11025025	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11025026	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11025028	0.92[EUR][1000 genomes]
rs11025037	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11604471	0.92[EUR][1000 genomes]
rs11604483	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs11606057	0.93[CEU][hapmap];0.92[EUR][1000 genomes]
rs11607797	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12270581	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12273085	0.89[EUR][1000 genomes]
rs12801321	0.94[CEU][hapmap];0.94[EUR][1000 genomes]
rs1393954	0.94[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs1393955	0.94[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs1503506	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1503507	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1503508	0.92[EUR][1000 genomes]
rs1546327	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs2042687	0.88[CEU][hapmap];0.91[EUR][1000 genomes]
rs2042688	0.94[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2271001	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28891775	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3758875	0.88[CHB][hapmap];0.84[JPT][hapmap];0.91[ASN][1000 genomes]
rs3802796	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3802797	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3802798	0.94[CEU][hapmap];0.94[EUR][1000 genomes]
rs4756990	0.91[EUR][1000 genomes]
rs4757757	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4757758	0.89[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4757759	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4757760	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59393175	0.91[ASN][1000 genomes]
rs7103110	0.89[ASN][1000 genomes]
rs7111105	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7120462	0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs7129212	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7129326	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7934179	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs7950603	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7950788	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19139600-19175000	Weak transcription	Pancreas	Pancrea
2	chr11:19139800-19172000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:19140000-19169600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr11:19140000-19186400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:19140200-19175000	Weak transcription	Thymus	Thymus
6	chr11:19140800-19186800	Weak transcription	Colonic Mucosa	Colon
7	chr11:19142800-19173200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr11:19143400-19185800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:19143400-19186400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr11:19143400-19201600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr11:19143600-19170400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr11:19143600-19197400	Weak transcription	Small Intestine	intestine
13	chr11:19147400-19170600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr11:19147600-19174200	Weak transcription	Osteobl	bone
15	chr11:19152800-19175000	Weak transcription	Psoas Muscle	Psoas
16	chr11:19153200-19186600	Weak transcription	Aorta	Aorta
17	chr11:19154000-19175000	Weak transcription	Ovary	ovary
18	chr11:19154400-19174800	Weak transcription	Left Ventricle	heart
19	chr11:19154800-19171400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr11:19154800-19177200	Weak transcription	NHEK	skin
21	chr11:19155400-19170600	Weak transcription	GM12878-XiMat	blood
22	chr11:19156400-19175400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:19156600-19193200	Weak transcription	Fetal Stomach	stomach
24	chr11:19156800-19193800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:19156800-19194200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr11:19157000-19170400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr11:19157200-19186200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr11:19161600-19194400	Weak transcription	HSMM	muscle
29	chr11:19162200-19176200	Weak transcription	Gastric	stomach
30	chr11:19162800-19203000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr11:19163200-19171000	Weak transcription	Fetal Intestine Large	intestine
32	chr11:19163400-19178000	Weak transcription	Fetal Brain Female	brain
33	chr11:19163600-19170600	Weak transcription	Placenta	Placenta
34	chr11:19164000-19200400	Weak transcription	Fetal Brain Male	brain
35	chr11:19164600-19177600	Weak transcription	Fetal Lung	lung
36	chr11:19164800-19175200	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr11:19165400-19170600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:19165600-19169600	Weak transcription	Primary hematopoietic stem cells	blood
39	chr11:19165600-19170400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr11:19166200-19170600	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr11:19166200-19186200	Weak transcription	Brain Anterior Caudate	brain
42	chr11:19166400-19203000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr11:19166800-19170600	Weak transcription	NH-A	brain
44	chr11:19166800-19186400	Weak transcription	Brain Cingulate Gyrus	brain
45	chr11:19167000-19170400	Weak transcription	Fetal Thymus	thymus
46	chr11:19167000-19171600	Strong transcription	HUVEC	blood vessel
47	chr11:19167000-19172400	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr11:19167000-19194200	Weak transcription	Fetal Kidney	kidney
49	chr11:19167200-19173000	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr11:19167400-19176600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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