Variant report

Variant	rs10741761
Chromosome Location	chr11:19146531-19146532
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:19138048..19139887-chr11:19145761..19148096,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177054	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10500841	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10500842	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10766528	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10833064	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10833065	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11025021	0.94[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11025025	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11025026	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11025028	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs11025037	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11604471	0.94[EUR][1000 genomes]
rs11604483	0.94[ASW][hapmap];0.94[CEU][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes]
rs11606057	0.92[CEU][hapmap];0.81[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs11607797	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12270581	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12273085	0.92[EUR][1000 genomes]
rs12801321	0.88[ASW][hapmap];0.94[CEU][hapmap];0.87[TSI][hapmap];0.92[EUR][1000 genomes]
rs1393954	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1393955	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1393957	0.83[TSI][hapmap]
rs1503506	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1503507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1503508	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1546327	0.94[CEU][hapmap];0.92[EUR][1000 genomes]
rs1875724	0.85[ASN][1000 genomes]
rs2042687	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs2042688	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2134622	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2271001	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28891775	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3758875	0.94[CHB][hapmap];0.89[JPT][hapmap];0.99[ASN][1000 genomes]
rs3802796	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3802797	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3802798	0.94[CEU][hapmap];0.92[TSI][hapmap];0.92[EUR][1000 genomes]
rs4326774	0.85[ASN][1000 genomes]
rs4756990	0.93[EUR][1000 genomes]
rs4757757	1.00[CEU][hapmap];0.94[CHB][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4757758	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757759	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757760	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59393175	1.00[ASN][1000 genomes]
rs7103110	0.97[ASN][1000 genomes]
rs7111105	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120462	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7129212	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129326	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7934179	0.94[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7950603	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7950788	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19139400-19147800	Weak transcription	Spleen	Spleen
2	chr11:19139400-19151400	Weak transcription	Aorta	Aorta
3	chr11:19139400-19156200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:19139400-19156200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:19139600-19148200	Weak transcription	Fetal Muscle Leg	muscle
6	chr11:19139600-19149200	Weak transcription	HSMM	muscle
7	chr11:19139600-19150400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr11:19139600-19153600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr11:19139600-19153800	Weak transcription	Ovary	ovary
10	chr11:19139600-19175000	Weak transcription	Pancreas	Pancrea
11	chr11:19139800-19149200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr11:19139800-19153800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:19139800-19154200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr11:19139800-19155000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr11:19139800-19172000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:19140000-19146800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:19140000-19147000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:19140000-19148600	Weak transcription	Brain Anterior Caudate	brain
19	chr11:19140000-19148600	Weak transcription	HepG2	liver
20	chr11:19140000-19149200	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr11:19140000-19153800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr11:19140000-19164800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:19140000-19167600	Weak transcription	HMEC	breast
24	chr11:19140000-19169600	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr11:19140000-19186400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr11:19140200-19149800	Weak transcription	Fetal Thymus	thymus
27	chr11:19140200-19175000	Weak transcription	Thymus	Thymus
28	chr11:19140400-19146600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr11:19140400-19146800	Weak transcription	Primary B cells from cord blood	blood
30	chr11:19140400-19152400	Weak transcription	Fetal Intestine Small	intestine
31	chr11:19140400-19153800	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr11:19140600-19148200	Weak transcription	Primary T cells from cord blood	blood
33	chr11:19140600-19152800	Weak transcription	Fetal Lung	lung
34	chr11:19140600-19153600	Weak transcription	Primary B cells from peripheral blood	blood
35	chr11:19140800-19186800	Weak transcription	Colonic Mucosa	Colon
36	chr11:19141200-19146800	Weak transcription	Duodenum Mucosa	Duodenum
37	chr11:19141200-19148200	Weak transcription	NH-A	brain
38	chr11:19141200-19148800	Weak transcription	Fetal Brain Female	brain
39	chr11:19141200-19154000	Weak transcription	Esophagus	oesophagus
40	chr11:19141200-19155800	Weak transcription	Fetal Stomach	stomach
41	chr11:19141400-19152000	Weak transcription	Fetal Intestine Large	intestine
42	chr11:19141600-19156200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr11:19142000-19146600	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr11:19142000-19146800	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr11:19142000-19146800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr11:19142000-19149600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr11:19142000-19168400	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr11:19142200-19148200	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr11:19142200-19148200	Weak transcription	Primary hematopoietic stem cells	blood
50	chr11:19142200-19150200	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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