Variant report

Variant	rs11025025
Chromosome Location	chr11:19140352-19140353
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:19137216..19140215-chr11:19140251..19142012,2	K562	blood:
2	chr11:19081397..19083267-chr11:19138143..19140482,2	MCF-7	breast:
3	chr11:19140016..19142477-chr11:19255077..19256863,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZDHHC13-4	chr11:19140273-19140364	NONHSAT018327

Variant related genes	Relation type
ENSG00000183695	Chromatin interaction
ENSG00000177054	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10500841	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10500842	0.99[ASN][1000 genomes]
rs10741761	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10766528	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10833064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10833065	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11025021	0.97[ASN][1000 genomes]
rs11025026	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11025028	0.93[EUR][1000 genomes]
rs11025037	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11604471	0.93[EUR][1000 genomes]
rs11604483	0.91[EUR][1000 genomes]
rs11606057	0.93[EUR][1000 genomes]
rs11607797	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12270581	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12273085	0.91[EUR][1000 genomes]
rs12801321	0.91[EUR][1000 genomes]
rs1393954	0.97[ASN][1000 genomes]
rs1393955	0.97[ASN][1000 genomes]
rs1503506	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1503507	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1503508	0.93[EUR][1000 genomes]
rs1546327	0.93[EUR][1000 genomes]
rs1875724	0.86[ASN][1000 genomes]
rs2042687	0.88[EUR][1000 genomes]
rs2042688	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2134622	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2271001	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28891775	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3758875	0.98[ASN][1000 genomes]
rs3802796	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3802797	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3802798	0.91[EUR][1000 genomes]
rs4326774	0.84[ASN][1000 genomes]
rs4756990	0.94[EUR][1000 genomes]
rs4757757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4757758	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4757759	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4757760	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59393175	0.99[ASN][1000 genomes]
rs7103110	0.98[ASN][1000 genomes]
rs7111105	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7120462	0.97[ASN][1000 genomes]
rs7129212	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7129326	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7934179	0.85[ASN][1000 genomes]
rs7950603	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7950788	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19139200-19141200	Flanking Active TSS	HUVEC	blood vessel
2	chr11:19139400-19140400	Flanking Active TSS	Duodenum Mucosa	Duodenum
3	chr11:19139400-19140600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:19139400-19140600	Flanking Active TSS	NHEK	skin
5	chr11:19139400-19140800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:19139400-19141000	Weak transcription	Placenta	Placenta
7	chr11:19139400-19142000	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr11:19139400-19144800	Weak transcription	Left Ventricle	heart
9	chr11:19139400-19147800	Weak transcription	Spleen	Spleen
10	chr11:19139400-19151400	Weak transcription	Aorta	Aorta
11	chr11:19139400-19156200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:19139400-19156200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:19139600-19140400	Enhancers	Primary B cells from cord blood	blood
14	chr11:19139600-19140400	Enhancers	Colon Smooth Muscle	Colon
15	chr11:19139600-19140400	Enhancers	Fetal Heart	heart
16	chr11:19139600-19140400	Flanking Active TSS	GM12878-XiMat	blood
17	chr11:19139600-19140600	Enhancers	Primary B cells from peripheral blood	blood
18	chr11:19139600-19140600	Weak transcription	Esophagus	oesophagus
19	chr11:19139600-19140600	Weak transcription	Fetal Stomach	stomach
20	chr11:19139600-19140800	Enhancers	Brain Substantia Nigra	brain
21	chr11:19139600-19141000	Weak transcription	Right Atrium	heart
22	chr11:19139600-19141200	Enhancers	Small Intestine	intestine
23	chr11:19139600-19141400	Enhancers	Primary T cells fromperipheralblood	blood
24	chr11:19139600-19141400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr11:19139600-19142200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr11:19139600-19142600	Weak transcription	Gastric	stomach
27	chr11:19139600-19143000	Weak transcription	Osteobl	bone
28	chr11:19139600-19143200	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr11:19139600-19143400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:19139600-19143600	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr11:19139600-19143600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr11:19139600-19143800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr11:19139600-19144800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr11:19139600-19144800	Weak transcription	Psoas Muscle	Psoas
35	chr11:19139600-19146400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr11:19139600-19148200	Weak transcription	Fetal Muscle Leg	muscle
37	chr11:19139600-19149200	Weak transcription	HSMM	muscle
38	chr11:19139600-19150400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr11:19139600-19153600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr11:19139600-19153800	Weak transcription	Ovary	ovary
41	chr11:19139600-19175000	Weak transcription	Pancreas	Pancrea
42	chr11:19139800-19140400	Weak transcription	Brain Hippocampus Middle	brain
43	chr11:19139800-19140400	Enhancers	Fetal Intestine Small	intestine
44	chr11:19139800-19140600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
45	chr11:19139800-19140600	Enhancers	Fetal Lung	lung
46	chr11:19139800-19140600	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr11:19139800-19140800	Enhancers	Primary T helper naive cells from peripheral blood	blood
48	chr11:19139800-19140800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
49	chr11:19139800-19141000	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr11:19139800-19141000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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