Variant report

Variant	rs1875724
Chromosome Location	chr11:19132379-19132380
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:19098389..19099222-chr11:19131553..19132388,4	MCF-7	breast:
2	chr11:19092362..19093374-chr11:19131560..19132799,3	MCF-7	breast:
3	chr11:19098280..19099189-chr11:19131718..19132697,3	MCF-7	breast:
4	chr11:19124492..19126550-chr11:19131420..19133331,2	K562	blood:
5	chr11:19092474..19093535-chr11:19131007..19132483,9	MCF-7	breast:
6	chr11:19126978..19129301-chr11:19130674..19132718,2	K562	blood:
7	chr11:19126978..19129549-chr11:19131218..19132869,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10500841	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10500842	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10741760	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10741761	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10766528	0.85[ASN][1000 genomes]
rs10833064	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10833065	0.85[ASN][1000 genomes]
rs11025021	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11025025	0.86[ASN][1000 genomes]
rs11025026	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11025037	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11607797	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12270581	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1393954	0.86[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1393955	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1503506	0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1503507	0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2042688	0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2134622	0.88[CHB][hapmap];0.94[JPT][hapmap]
rs2271001	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs3758875	0.88[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3802796	0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3802797	0.83[ASN][1000 genomes]
rs4757757	0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4757758	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4757759	0.85[ASN][1000 genomes]
rs4757760	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs59393175	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7103110	0.84[ASN][1000 genomes]
rs7111105	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7120462	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7129212	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7129326	0.85[ASN][1000 genomes]
rs7926950	0.82[EUR][1000 genomes]
rs7934179	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7950603	0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7950788	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19125000-19138600	Weak transcription	Gastric	stomach
2	chr11:19129400-19133400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr11:19130800-19132800	Enhancers	Fetal Muscle Leg	muscle
4	chr11:19130800-19133400	Enhancers	Fetal Heart	heart
5	chr11:19131600-19132400	Enhancers	Brain Hippocampus Middle	brain
6	chr11:19131600-19132600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:19131600-19132800	Enhancers	Pancreas	Pancrea
8	chr11:19131600-19138000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr11:19131600-19138000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:19131800-19132400	Enhancers	Brain Anterior Caudate	brain
11	chr11:19131800-19132400	Enhancers	Fetal Brain Male	brain
12	chr11:19132000-19132400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
13	chr11:19132000-19133000	Weak transcription	Fetal Brain Female	brain
14	chr11:19132000-19138000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr11:19132200-19132600	Enhancers	Brain Germinal Matrix	brain
16	chr11:19132200-19138000	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links