Variant report

Variant	rs2136960
Chromosome Location	chr4:152746189-152746190
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11943626	0.98[ASN][1000 genomes]
rs11944921	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13109601	0.90[ASN][1000 genomes]
rs13136369	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1397684	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34359168	0.98[ASN][1000 genomes]
rs34615528	0.98[ASN][1000 genomes]
rs4279186	0.98[ASN][1000 genomes]
rs4337716	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4525955	0.98[ASN][1000 genomes]
rs56175637	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6816292	0.84[EUR][1000 genomes]
rs6836954	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs2136960	SH3D19	cis	cerebellum	SCAN
rs2136960	FAM160A1	cis	cerebellum	SCAN
rs2136960	PET112L	cis	parietal	SCAN
rs2136960	PET112L	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152745200-152746400	Enhancers	Fetal Heart	heart
2	chr4:152745600-152746200	Enhancers	HepG2	liver
3	chr4:152745800-152746400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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