Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11099829	0.82[AFR][1000 genomes]
rs11943626	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11944921	0.84[ASN][1000 genomes]
rs13109601	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13121178	0.81[ASN][1000 genomes]
rs13121190	0.81[ASN][1000 genomes]
rs13136369	0.86[ASN][1000 genomes]
rs13139327	0.80[ASN][1000 genomes]
rs13145446	0.81[ASN][1000 genomes]
rs1397684	0.95[ASN][1000 genomes]
rs2136960	0.98[ASN][1000 genomes]
rs2136961	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34162814	0.82[AMR][1000 genomes]
rs34359168	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4279186	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4337716	0.94[ASN][1000 genomes]
rs4399967	0.81[ASN][1000 genomes]
rs4525955	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56175637	1.00[ASN][1000 genomes]
rs61308159	0.81[ASN][1000 genomes]
rs6816292	0.81[ASN][1000 genomes]
rs6836954	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6846809	0.81[ASN][1000 genomes]
rs6847303	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152729600-152739400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:152731200-152734000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr4:152731600-152734000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr4:152732000-152733400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr4:152732000-152733800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr4:152732000-152734000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr4:152732200-152733200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr4:152732200-152733400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr4:152732200-152733400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr4:152732200-152733600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr4:152732400-152733000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:152732400-152733600	Enhancers	Dnd41	blood
13	chr4:152732600-152733000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr4:152732600-152733000	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr4:152732600-152735000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr4:152732800-152733800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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