Variant report

Variant	rs2136961
Chromosome Location	chr4:152746079-152746080
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11943626	0.82[EUR][1000 genomes]
rs13109601	0.81[EUR][1000 genomes]
rs34359168	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34615528	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4279186	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4525955	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6836954	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7684366	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2136961	SH3D19	cis	cerebellum	SCAN
rs2136961	FAM160A1	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152745200-152746400	Enhancers	Fetal Heart	heart
2	chr4:152745600-152746200	Enhancers	HepG2	liver
3	chr4:152745800-152746400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links