Variant report

Variant	rs13109601
Chromosome Location	chr4:152731656-152731657
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11943626	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13136369	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1397684	0.87[ASN][1000 genomes]
rs2136960	0.90[ASN][1000 genomes]
rs2136961	0.81[EUR][1000 genomes]
rs34162814	0.80[AMR][1000 genomes]
rs34359168	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34615528	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4279186	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4337716	0.87[ASN][1000 genomes]
rs4525955	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56175637	0.92[ASN][1000 genomes]
rs6836954	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152726000-152731800	Enhancers	Fetal Heart	heart
2	chr4:152726400-152732000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr4:152728200-152732000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr4:152728200-152732000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:152729400-152731800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr4:152729400-152732600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:152729600-152739400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:152730000-152732200	Weak transcription	Right Atrium	heart
9	chr4:152730200-152731800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr4:152731000-152732400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:152731200-152732200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
12	chr4:152731200-152734000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr4:152731400-152732200	Enhancers	H9 Cell Line	embryonic stem cell
14	chr4:152731600-152732200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
15	chr4:152731600-152734000	Enhancers	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links