Variant report

Variant	rs4399967
Chromosome Location	chr4:152729312-152729313
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10013612	0.85[EUR][1000 genomes]
rs10016160	0.85[EUR][1000 genomes]
rs10222838	0.85[EUR][1000 genomes]
rs10222925	0.85[EUR][1000 genomes]
rs11099828	0.89[EUR][1000 genomes]
rs11099829	0.90[EUR][1000 genomes]
rs11723227	0.85[EUR][1000 genomes]
rs11943626	0.81[ASN][1000 genomes]
rs11944921	0.97[ASN][1000 genomes]
rs12502446	0.82[EUR][1000 genomes]
rs13108359	0.96[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs13119490	0.84[EUR][1000 genomes]
rs13121178	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13121190	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13136369	0.91[ASN][1000 genomes]
rs13139327	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13145446	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13147021	0.88[EUR][1000 genomes]
rs1366907	0.85[EUR][1000 genomes]
rs1397683	0.85[EUR][1000 genomes]
rs1429558	0.85[EUR][1000 genomes]
rs1429559	0.84[EUR][1000 genomes]
rs1877185	0.85[EUR][1000 genomes]
rs1877186	0.85[EUR][1000 genomes]
rs2089811	0.85[EUR][1000 genomes]
rs2175409	0.85[EUR][1000 genomes]
rs34359168	0.81[ASN][1000 genomes]
rs34615528	0.81[ASN][1000 genomes]
rs3805356	0.84[EUR][1000 genomes]
rs3828546	0.84[EUR][1000 genomes]
rs4279186	0.81[ASN][1000 genomes]
rs4525955	0.81[ASN][1000 genomes]
rs4554052	0.90[EUR][1000 genomes]
rs4643789	0.94[EUR][1000 genomes]
rs4696110	0.83[EUR][1000 genomes]
rs4696295	0.85[EUR][1000 genomes]
rs4696297	0.88[EUR][1000 genomes]
rs56175637	0.81[ASN][1000 genomes]
rs58751443	0.86[EUR][1000 genomes]
rs59350867	0.85[EUR][1000 genomes]
rs61308159	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6535822	0.84[EUR][1000 genomes]
rs6816292	1.00[ASN][1000 genomes]
rs6836954	0.81[ASN][1000 genomes]
rs6846809	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6847303	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6847844	0.85[EUR][1000 genomes]
rs6849111	0.86[EUR][1000 genomes]
rs6855883	0.84[EUR][1000 genomes]
rs6857073	0.85[EUR][1000 genomes]
rs7654294	0.85[EUR][1000 genomes]
rs7675818	0.85[EUR][1000 genomes]
rs867800	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152721200-152731400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:152724000-152729800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:152726000-152731800	Enhancers	Fetal Heart	heart
4	chr4:152726200-152731200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr4:152726400-152732000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr4:152726800-152730000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:152727200-152729400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr4:152727200-152730000	Enhancers	HSMMtube	muscle
9	chr4:152727400-152729400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:152727400-152729600	Enhancers	NHDF-Ad	bronchial
11	chr4:152727400-152729800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr4:152727400-152729800	Enhancers	NHEK	skin
13	chr4:152727400-152729800	Enhancers	Osteobl	bone
14	chr4:152727600-152729400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr4:152727600-152729400	Enhancers	Stomach Smooth Muscle	stomach
16	chr4:152727600-152729800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr4:152727800-152729400	Enhancers	Fetal Muscle Leg	muscle
18	chr4:152727800-152729400	Enhancers	NHLF	lung
19	chr4:152728000-152729400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:152728200-152732000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr4:152728200-152732000	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr4:152728400-152729400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr4:152728400-152729400	Enhancers	Duodenum Mucosa	Duodenum
24	chr4:152728400-152729400	Enhancers	Fetal Muscle Trunk	muscle
25	chr4:152728400-152729400	Enhancers	NH-A	brain
26	chr4:152728400-152729600	Flanking Active TSS	Hela-S3	cervix
27	chr4:152728400-152729800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr4:152728600-152729400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr4:152728600-152729400	Enhancers	Esophagus	oesophagus
30	chr4:152728600-152729400	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr4:152728600-152730000	Enhancers	Right Atrium	heart
32	chr4:152728800-152729400	Enhancers	HSMM	muscle
33	chr4:152728800-152729600	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr4:152729000-152729400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr4:152729000-152729400	Enhancers	Left Ventricle	heart
36	chr4:152729200-152729600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr4:152729200-152729600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr4:152729200-152729800	Enhancers	Right Ventricle	heart
39	chr4:152729200-152730200	Enhancers	H1 Cell Line	embryonic stem cell
40	chr4:152729200-152730200	Enhancers	HUES6 Cell Line	embryonic stem cell

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