Variant report

Variant	rs58751443
Chromosome Location	chr4:152709905-152709906
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10001603	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10013612	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10016160	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10222838	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10222925	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11099828	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11099829	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11723227	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12502446	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12503677	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12506000	0.80[ASN][1000 genomes]
rs12641433	0.84[EUR][1000 genomes]
rs12641438	0.84[EUR][1000 genomes]
rs12641441	0.84[EUR][1000 genomes]
rs12647420	0.84[EUR][1000 genomes]
rs12647462	0.84[EUR][1000 genomes]
rs12647465	0.84[EUR][1000 genomes]
rs12647616	0.85[EUR][1000 genomes]
rs13108359	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13119490	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13121178	0.82[EUR][1000 genomes]
rs13121190	0.85[EUR][1000 genomes]
rs13137669	0.83[AMR][1000 genomes]
rs13139327	0.86[EUR][1000 genomes]
rs13145446	0.82[EUR][1000 genomes]
rs13147021	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1366907	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1397683	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1429558	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1429559	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1877185	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1877186	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1877188	0.83[EUR][1000 genomes]
rs2089811	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2175409	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2406973	0.85[EUR][1000 genomes]
rs2406974	0.81[EUR][1000 genomes]
rs28659854	0.84[EUR][1000 genomes]
rs3805356	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3828546	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4399967	0.86[EUR][1000 genomes]
rs4554052	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4643789	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4696106	0.83[EUR][1000 genomes]
rs4696107	0.83[EUR][1000 genomes]
rs4696108	0.84[EUR][1000 genomes]
rs4696110	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4696286	0.83[EUR][1000 genomes]
rs4696287	0.83[EUR][1000 genomes]
rs4696290	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4696294	0.81[AMR][1000 genomes]
rs4696295	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4696296	0.83[ASN][1000 genomes]
rs4696297	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59350867	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61308159	0.86[EUR][1000 genomes]
rs62328980	0.81[EUR][1000 genomes]
rs6535816	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6535822	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6816002	0.81[EUR][1000 genomes]
rs6847844	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6849111	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6855883	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6857073	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7654294	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7669465	0.85[EUR][1000 genomes]
rs7669761	0.85[EUR][1000 genomes]
rs7675818	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs867800	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9996320	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152707000-152710600	Weak transcription	Fetal Heart	heart
2	chr4:152707800-152710200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:152708000-152717600	Weak transcription	Fetal Intestine Small	intestine
4	chr4:152709000-152712600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr4:152709200-152711000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr4:152709600-152710800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr4:152709600-152711000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:152709800-152711000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr4:152709800-152711000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr4:152709800-152711200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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