Variant report

Variant	rs11099828
Chromosome Location	chr4:152727094-152727095
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10001603	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10013612	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10016160	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10222838	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10222925	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11099829	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11723227	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12502446	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12503677	0.80[ASN][1000 genomes]
rs13108359	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13119490	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13121178	0.92[EUR][1000 genomes]
rs13121190	0.87[EUR][1000 genomes]
rs13139327	0.89[EUR][1000 genomes]
rs13145446	0.92[EUR][1000 genomes]
rs13147021	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1366907	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1397683	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1429558	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1429559	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1877185	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1877186	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2089811	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2175409	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3805356	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3828546	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4399967	0.89[EUR][1000 genomes]
rs4554052	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4643789	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4696110	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4696290	0.87[ASN][1000 genomes]
rs4696295	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4696296	0.83[ASN][1000 genomes]
rs4696297	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58751443	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59350867	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61308159	0.89[EUR][1000 genomes]
rs6535816	0.81[ASN][1000 genomes]
rs6535822	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6847844	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6849111	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6855883	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6857073	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7654294	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7675818	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs867800	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9996320	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152719200-152727400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:152720200-152728400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:152720200-152728600	Weak transcription	Right Atrium	heart
4	chr4:152721000-152729000	Weak transcription	Left Ventricle	heart
5	chr4:152721200-152729200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr4:152721200-152731400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr4:152721400-152727600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr4:152721400-152727800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr4:152721600-152727600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr4:152722400-152727800	Weak transcription	Fetal Intestine Large	intestine
11	chr4:152722400-152727800	Weak transcription	Fetal Intestine Small	intestine
12	chr4:152723600-152729000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:152723800-152729200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr4:152724000-152729800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:152725000-152727400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr4:152725000-152728600	Enhancers	HSMM	muscle
17	chr4:152725200-152727200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr4:152725800-152727800	Enhancers	NH-A	brain
19	chr4:152726000-152727600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr4:152726000-152731800	Enhancers	Fetal Heart	heart
21	chr4:152726200-152727200	Weak transcription	HSMMtube	muscle
22	chr4:152726200-152727400	Weak transcription	Osteobl	bone
23	chr4:152726200-152727600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr4:152726200-152731200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr4:152726400-152727400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr4:152726400-152732000	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr4:152726800-152727800	Weak transcription	NHLF	lung
28	chr4:152726800-152730000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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