Variant report

Variant	rs13108359
Chromosome Location	chr4:152727852-152727853
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10001603	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10013612	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10016160	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10222838	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10222925	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11099828	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11099829	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11723227	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12502446	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12503677	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13119490	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13121178	0.89[EUR][1000 genomes]
rs13121190	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs13139327	0.96[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs13145446	0.89[EUR][1000 genomes]
rs13146981	0.82[AMR][1000 genomes]
rs13147021	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1366907	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1397683	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1429558	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1429559	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1877185	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1877186	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2089811	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2175409	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3805356	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3828546	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4399967	0.96[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4554052	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4643789	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4696110	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4696290	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4696295	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4696296	0.83[ASN][1000 genomes]
rs4696297	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58751443	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59350867	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61308159	0.95[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs6535816	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6535822	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6847844	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6849111	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6855883	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6857073	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7654294	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7675818	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs867800	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9996320	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152720200-152728400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:152720200-152728600	Weak transcription	Right Atrium	heart
3	chr4:152721000-152729000	Weak transcription	Left Ventricle	heart
4	chr4:152721200-152729200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr4:152721200-152731400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr4:152723600-152729000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:152723800-152729200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:152724000-152729800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:152725000-152728600	Enhancers	HSMM	muscle
10	chr4:152726000-152731800	Enhancers	Fetal Heart	heart
11	chr4:152726200-152731200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr4:152726400-152732000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr4:152726800-152730000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr4:152727200-152729400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr4:152727200-152730000	Enhancers	HSMMtube	muscle
16	chr4:152727400-152728800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr4:152727400-152729200	Enhancers	Placenta Amnion	Placenta Amnion
18	chr4:152727400-152729400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr4:152727400-152729600	Enhancers	NHDF-Ad	bronchial
20	chr4:152727400-152729800	Enhancers	Muscle Satellite Cultured Cells	--
21	chr4:152727400-152729800	Enhancers	NHEK	skin
22	chr4:152727400-152729800	Enhancers	Osteobl	bone
23	chr4:152727600-152728000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr4:152727600-152728000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr4:152727600-152728200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
26	chr4:152727600-152728200	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr4:152727600-152728200	Enhancers	HMEC	breast
28	chr4:152727600-152728400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr4:152727600-152728400	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr4:152727600-152728600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr4:152727600-152728600	Enhancers	Placenta	Placenta
32	chr4:152727600-152728800	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr4:152727600-152728800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr4:152727600-152728800	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr4:152727600-152728800	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr4:152727600-152729000	Enhancers	Adipose Nuclei	Adipose
37	chr4:152727600-152729400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr4:152727600-152729400	Enhancers	Stomach Smooth Muscle	stomach
39	chr4:152727600-152729800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr4:152727800-152728000	Enhancers	Spleen	Spleen
41	chr4:152727800-152728000	Flanking Active TSS	Hela-S3	cervix
42	chr4:152727800-152728000	Flanking Active TSS	NH-A	brain
43	chr4:152727800-152728200	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr4:152727800-152728600	Enhancers	Aorta	Aorta
45	chr4:152727800-152728800	Enhancers	Fetal Intestine Large	intestine
46	chr4:152727800-152729200	Enhancers	Fetal Intestine Small	intestine
47	chr4:152727800-152729400	Enhancers	Fetal Muscle Leg	muscle
48	chr4:152727800-152729400	Enhancers	NHLF	lung

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