Variant report

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11243033	0.88[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2145979	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4959353	0.92[ASN][1000 genomes]
rs4959354	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4959355	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6597161	1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6926631	1.00[CEU][hapmap];0.90[GIH][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9502333	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522836	chr6:5727250-5737122	Weak transcription Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2145980	FARS2	cis	parietal	SCAN
rs2145980	PIP5K1P1	cis	parietal	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5723000-5744200	Weak transcription	Right Ventricle	heart
2	chr6:5725200-5749200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:5726000-5749400	Weak transcription	Fetal Intestine Small	intestine
4	chr6:5727000-5762400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:5729600-5744800	Weak transcription	Esophagus	oesophagus
6	chr6:5729800-5739800	Weak transcription	Primary B cells from cord blood	blood
7	chr6:5729800-5744200	Weak transcription	Left Ventricle	heart
8	chr6:5730000-5743000	Weak transcription	Primary B cells from peripheral blood	blood
9	chr6:5730800-5746600	Weak transcription	Fetal Stomach	stomach
10	chr6:5732600-5740200	Weak transcription	HepG2	liver
11	chr6:5732600-5749200	Weak transcription	Spleen	Spleen
12	chr6:5734800-5741600	Weak transcription	Aorta	Aorta
13	chr6:5734800-5744400	Weak transcription	Right Atrium	heart
14	chr6:5736400-5743600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr6:5736600-5741000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr6:5736600-5743800	Weak transcription	Lung	lung
17	chr6:5736600-5751200	Weak transcription	Ovary	ovary
18	chr6:5736800-5743000	Weak transcription	Fetal Muscle Leg	muscle
19	chr6:5736800-5743400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:5736800-5754400	Weak transcription	Pancreas	Pancrea
21	chr6:5737000-5737400	Strong transcription	Primary T cells from cord blood	blood

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