Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:5725977..5728303-chr6:5734560..5736666,2	K562	blood:
2	chr6:5728615..5730651-chr6:5733812..5736402,2	K562	blood:
3	chr6:5733558..5735312-chr6:5742997..5744692,2	K562	blood:

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11243033	0.85[YRI][hapmap]
rs2145979	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2145980	1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4959355	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6921376	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6926631	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6926774	0.85[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7746937	0.82[CHB][hapmap]
rs9502333	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522836	chr6:5727250-5737122	Weak transcription Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6597161	FARS2	cis	parietal	SCAN
rs6597161	PIP5K1P1	cis	parietal	SCAN
rs6597161	CAGE1	cis	parietal	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5723000-5744200	Weak transcription	Right Ventricle	heart
2	chr6:5725000-5737000	Weak transcription	Primary T cells from cord blood	blood
3	chr6:5725200-5749200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:5726000-5749400	Weak transcription	Fetal Intestine Small	intestine
5	chr6:5727000-5762400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:5729600-5744800	Weak transcription	Esophagus	oesophagus
7	chr6:5729800-5736400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:5729800-5736400	Weak transcription	Lung	lung
9	chr6:5729800-5739800	Weak transcription	Primary B cells from cord blood	blood
10	chr6:5729800-5744200	Weak transcription	Left Ventricle	heart
11	chr6:5730000-5743000	Weak transcription	Primary B cells from peripheral blood	blood
12	chr6:5730800-5746600	Weak transcription	Fetal Stomach	stomach
13	chr6:5731200-5735600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr6:5731200-5736000	Weak transcription	Fetal Heart	heart
15	chr6:5732600-5736000	Weak transcription	Fetal Muscle Trunk	muscle
16	chr6:5732600-5740200	Weak transcription	HepG2	liver
17	chr6:5732600-5749200	Weak transcription	Spleen	Spleen
18	chr6:5733800-5736200	Weak transcription	Pancreas	Pancrea
19	chr6:5734800-5736400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:5734800-5741600	Weak transcription	Aorta	Aorta
21	chr6:5734800-5744400	Weak transcription	Right Atrium	heart

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