Variant report

Variant	rs6926774
Chromosome Location	chr6:5732820-5732821
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11243033	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2145979	0.89[ASN][1000 genomes]
rs4959353	0.87[EUR][1000 genomes]
rs4959354	0.92[CEU][hapmap]
rs6597161	0.85[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6921376	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6926631	0.85[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522675	chr6:5726231-5732820	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv522836	chr6:5727250-5737122	Weak transcription Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv969346	chr6:5728002-5734633	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6926774	CAGE1	cis	parietal	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5723000-5744200	Weak transcription	Right Ventricle	heart
2	chr6:5725000-5737000	Weak transcription	Primary T cells from cord blood	blood
3	chr6:5725200-5749200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:5726000-5749400	Weak transcription	Fetal Intestine Small	intestine
5	chr6:5727000-5762400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:5729600-5744800	Weak transcription	Esophagus	oesophagus
7	chr6:5729800-5736400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:5729800-5736400	Weak transcription	Lung	lung
9	chr6:5729800-5739800	Weak transcription	Primary B cells from cord blood	blood
10	chr6:5729800-5744200	Weak transcription	Left Ventricle	heart
11	chr6:5730000-5743000	Weak transcription	Primary B cells from peripheral blood	blood
12	chr6:5730800-5733000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:5730800-5746600	Weak transcription	Fetal Stomach	stomach
14	chr6:5731200-5735600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr6:5731200-5736000	Weak transcription	Fetal Heart	heart
16	chr6:5731400-5733200	Enhancers	Fetal Thymus	thymus
17	chr6:5732600-5736000	Weak transcription	Fetal Muscle Trunk	muscle
18	chr6:5732600-5740200	Weak transcription	HepG2	liver
19	chr6:5732600-5749200	Weak transcription	Spleen	Spleen

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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