Variant report

Variant	rs11243033
Chromosome Location	chr6:5736743-5736744
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2145980	0.88[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4959353	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4959354	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4959355	0.88[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[ASN][1000 genomes]
rs6597161	0.85[YRI][hapmap]
rs6921376	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6926774	1.00[CEU][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522836	chr6:5727250-5737122	Weak transcription Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5723000-5744200	Weak transcription	Right Ventricle	heart
2	chr6:5725000-5737000	Weak transcription	Primary T cells from cord blood	blood
3	chr6:5725200-5749200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:5726000-5749400	Weak transcription	Fetal Intestine Small	intestine
5	chr6:5727000-5762400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:5729600-5744800	Weak transcription	Esophagus	oesophagus
7	chr6:5729800-5739800	Weak transcription	Primary B cells from cord blood	blood
8	chr6:5729800-5744200	Weak transcription	Left Ventricle	heart
9	chr6:5730000-5743000	Weak transcription	Primary B cells from peripheral blood	blood
10	chr6:5730800-5746600	Weak transcription	Fetal Stomach	stomach
11	chr6:5732600-5740200	Weak transcription	HepG2	liver
12	chr6:5732600-5749200	Weak transcription	Spleen	Spleen
13	chr6:5734800-5741600	Weak transcription	Aorta	Aorta
14	chr6:5734800-5744400	Weak transcription	Right Atrium	heart
15	chr6:5736000-5736800	Enhancers	Fetal Heart	heart
16	chr6:5736200-5736800	Enhancers	Fetal Muscle Leg	muscle
17	chr6:5736200-5736800	Enhancers	Pancreas	Pancrea
18	chr6:5736400-5736800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:5736400-5737000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr6:5736400-5743600	Weak transcription	Fetal Muscle Trunk	muscle
21	chr6:5736600-5737000	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr6:5736600-5741000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr6:5736600-5743800	Weak transcription	Lung	lung
24	chr6:5736600-5751200	Weak transcription	Ovary	ovary

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