Variant report

Variant	rs2146168
Chromosome Location	chr6:144552362-144552363
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11961223	1.00[EUR][1000 genomes]
rs11970218	1.00[EUR][1000 genomes]
rs2146169	1.00[EUR][1000 genomes]
rs2146171	1.00[EUR][1000 genomes]
rs4613834	1.00[EUR][1000 genomes]
rs6913880	1.00[EUR][1000 genomes]
rs6939413	1.00[EUR][1000 genomes]
rs73587456	1.00[EUR][1000 genomes]
rs7757532	1.00[EUR][1000 genomes]
rs7758116	1.00[EUR][1000 genomes]
rs7759718	1.00[EUR][1000 genomes]
rs7767838	1.00[EUR][1000 genomes]
rs9484849	1.00[EUR][1000 genomes]
rs9496919	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144538200-144561400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:144550800-144553400	Weak transcription	HSMMtube	muscle
3	chr6:144550800-144554800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:144551000-144553200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:144551200-144553600	Weak transcription	HSMM	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links