Variant report

Variant	rs6913880
Chromosome Location	chr6:144536404-144536405
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:144525272..144527107-chr6:144534912..144538117,3	K562	blood:
2	chr6:144494396..144496761-chr6:144536161..144538816,2	K562	blood:
3	chr6:144521511..144524217-chr6:144535880..144537916,2	MCF-7	breast:
4	chr6:144471017..144473843-chr6:144535410..144538826,5	MCF-7	breast:
5	chr6:144470263..144473848-chr6:144535893..144539844,4	MCF-7	breast:
6	chr6:144531404..144534251-chr6:144536008..144537588,2	K562	blood:
7	chr6:144533301..144535382-chr6:144535722..144537282,2	MCF-7	breast:
8	chr6:144415145..144417746-chr6:144535932..144539516,6	K562	blood:
9	chr6:144509051..144510978-chr6:144536060..144537778,2	MCF-7	breast:
10	chr6:144413850..144419094-chr6:144535932..144540083,10	K562	blood:
11	chr6:144533845..144538610-chr6:144604054..144608164,4	MCF-7	breast:
12	chr6:144528833..144531316-chr6:144534219..144536823,2	MCF-7	breast:
13	chr6:144425724..144426721-chr6:144536343..144537862,6	MCF-7	breast:
14	chr6:144383030..144384886-chr6:144536136..144538729,2	K562	blood:
15	chr6:144476586..144479088-chr6:144535900..144538153,2	MCF-7	breast:
16	chr6:144492987..144496761-chr6:144536161..144539175,3	K562	blood:
17	chr6:144525386..144527700-chr6:144534912..144536588,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000169976	Chromatin interaction
ENSG00000152818	Chromatin interaction
ENSG00000135604	Chromatin interaction
ENSG00000217027	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11961223	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11970218	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2146168	1.00[EUR][1000 genomes]
rs2146169	1.00[EUR][1000 genomes]
rs2146171	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4613834	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66534512	0.91[AFR][1000 genomes]
rs6939413	1.00[EUR][1000 genomes]
rs73587456	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7757532	0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7758116	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7759718	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7767838	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9484849	1.00[EUR][1000 genomes]
rs9496919	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144535600-144536800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr6:144536000-144536600	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr6:144536000-144536600	Enhancers	Primary B cells from peripheral blood	blood
4	chr6:144536000-144536600	Enhancers	Primary T cells from cord blood	blood
5	chr6:144536000-144536600	Enhancers	Primary T cells fromperipheralblood	blood
6	chr6:144536000-144536600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:144536000-144536600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr6:144536000-144536600	Enhancers	Fetal Muscle Leg	muscle
9	chr6:144536000-144536600	Enhancers	Pancreas	Pancrea
10	chr6:144536000-144536800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:144536000-144536800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:144536000-144536800	Enhancers	Spleen	Spleen
13	chr6:144536200-144536600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:144536200-144536600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr6:144536200-144536600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:144536200-144536600	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr6:144536200-144536600	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr6:144536200-144536600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr6:144536200-144536600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr6:144536200-144536600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr6:144536200-144536600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr6:144536200-144536600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr6:144536200-144536600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:144536200-144536600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:144536200-144536600	Enhancers	Esophagus	oesophagus
26	chr6:144536200-144536600	Enhancers	Fetal Intestine Small	intestine
27	chr6:144536200-144536600	Enhancers	Fetal Muscle Trunk	muscle
28	chr6:144536200-144536600	Enhancers	Placenta	Placenta
29	chr6:144536200-144536600	Enhancers	Fetal Stomach	stomach
30	chr6:144536200-144536600	Enhancers	Fetal Thymus	thymus
31	chr6:144536200-144536600	Enhancers	Left Ventricle	heart
32	chr6:144536200-144536600	Enhancers	Psoas Muscle	Psoas
33	chr6:144536200-144536600	Enhancers	Right Atrium	heart
34	chr6:144536200-144536600	Enhancers	Right Ventricle	heart
35	chr6:144536200-144536600	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr6:144536200-144536600	Enhancers	Small Intestine	intestine
37	chr6:144536200-144536600	Enhancers	Stomach Mucosa	stomach
38	chr6:144536200-144536600	Active TSS	Hela-S3	cervix
39	chr6:144536200-144536600	Flanking Active TSS	HepG2	liver
40	chr6:144536200-144536600	Enhancers	HMEC	breast
41	chr6:144536200-144536600	Enhancers	NHEK	skin
42	chr6:144536200-144536800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr6:144536200-144536800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:144536200-144536800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr6:144536200-144536800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
46	chr6:144536200-144536800	Enhancers	Fetal Heart	heart
47	chr6:144536200-144536800	Enhancers	Lung	lung
48	chr6:144536200-144537000	Flanking Active TSS	Colon Smooth Muscle	Colon
49	chr6:144536200-144537000	Flanking Active TSS	Duodenum Mucosa	Duodenum
50	chr6:144536200-144537200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--

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