Variant report

Variant	rs4613834
Chromosome Location	chr6:144555692-144555693
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11961223	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11970218	1.00[EUR][1000 genomes]
rs2146168	1.00[EUR][1000 genomes]
rs2146169	1.00[EUR][1000 genomes]
rs2146171	1.00[EUR][1000 genomes]
rs66534512	0.81[AFR][1000 genomes]
rs6913880	0.82[YRI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6939413	1.00[EUR][1000 genomes]
rs73587456	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7757532	0.89[YRI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7758116	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7759718	1.00[EUR][1000 genomes]
rs7767838	1.00[EUR][1000 genomes]
rs9484849	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9496919	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144538200-144561400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:144553400-144556000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr6:144553600-144555800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:144553600-144555800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:144553600-144560800	Weak transcription	Right Atrium	heart
6	chr6:144553800-144556200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:144554000-144556400	Enhancers	H9 Cell Line	embryonic stem cell
8	chr6:144554800-144555800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr6:144554800-144556600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr6:144555000-144555800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr6:144555200-144556000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr6:144555400-144555800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:144555600-144555800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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