Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr13:49278442-49278533	Kidney_OC	kidney:	n/a	n/a

Variant related genes	Relation type
CYSLTR2	TF binding region

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12853985	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12875723	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1323552	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1323553	0.84[EUR][1000 genomes]
rs1323556	0.83[AMR][1000 genomes]
rs1575464	0.82[AMR][1000 genomes]
rs1575465	0.82[AMR][1000 genomes]
rs2407246	0.82[AMR][1000 genomes]
rs2897623	0.84[AMR][1000 genomes]
rs4608235	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4620866	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7318887	0.80[AMR][1000 genomes]
rs7323160	0.82[AMR][1000 genomes]
rs7330127	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7332008	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7333434	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7336022	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs912278	0.83[EUR][1000 genomes]
rs9316409	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9568083	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9568084	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9591194	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9595960	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9595961	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9595966	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9595967	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9595972	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832604	chr13:49061081-49281807	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv832605	chr13:49171305-49344970	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49251800-49281600	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr13:49252000-49283600	Weak transcription	Primary T cells from cord blood	blood
3	chr13:49256600-49281200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr13:49259000-49302200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr13:49264000-49283800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr13:49269400-49282000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr13:49271200-49281200	Weak transcription	Left Ventricle	heart
8	chr13:49271600-49279000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr13:49272200-49279000	Weak transcription	Dnd41	blood
10	chr13:49272400-49278600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr13:49277000-49279400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr13:49277400-49279400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr13:49278400-49278600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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