Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12853985	0.82[EUR][1000 genomes]
rs12875723	0.82[EUR][1000 genomes]
rs1323552	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1323553	0.82[EUR][1000 genomes]
rs1323556	0.81[EUR][1000 genomes]
rs1575464	0.80[EUR][1000 genomes]
rs1575465	0.80[EUR][1000 genomes]
rs2146860	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4608235	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4620866	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4942769	0.80[EUR][1000 genomes]
rs7323160	0.80[EUR][1000 genomes]
rs7330127	0.80[EUR][1000 genomes]
rs7332008	0.80[EUR][1000 genomes]
rs7333434	0.82[EUR][1000 genomes]
rs7336022	0.80[EUR][1000 genomes]
rs912278	0.82[CEU][hapmap];0.81[CHB][hapmap];0.89[TSI][hapmap];0.80[EUR][1000 genomes]
rs9316409	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9568083	0.82[EUR][1000 genomes]
rs9568084	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9591194	0.82[EUR][1000 genomes]
rs9595961	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9595966	0.80[EUR][1000 genomes]
rs9595967	0.80[EUR][1000 genomes]
rs9595972	0.81[CHB][hapmap];0.89[TSI][hapmap];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832604	chr13:49061081-49281807	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv832605	chr13:49171305-49344970	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49251000-49257200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr13:49251400-49254600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr13:49251800-49256000	Enhancers	Placenta	Placenta
4	chr13:49251800-49281600	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr13:49252000-49262200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr13:49252000-49283600	Weak transcription	Primary T cells from cord blood	blood
7	chr13:49252200-49256200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr13:49252600-49254600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr13:49252800-49258200	Weak transcription	Dnd41	blood
10	chr13:49253200-49253600	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr13:49253200-49254000	Enhancers	Primary neutrophils fromperipheralblood	blood

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