Variant report

Variant	rs9316409
Chromosome Location	chr13:49253047-49253048
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12875723	0.80[EUR][1000 genomes]
rs1323552	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1323553	0.80[EUR][1000 genomes]
rs2146860	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4608235	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4620866	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7330127	0.82[EUR][1000 genomes]
rs7332008	0.82[EUR][1000 genomes]
rs7336022	0.82[EUR][1000 genomes]
rs912278	0.81[CHB][hapmap]
rs9568083	0.80[EUR][1000 genomes]
rs9568084	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9595960	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9595961	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9595966	0.82[EUR][1000 genomes]
rs9595967	0.82[EUR][1000 genomes]
rs9595972	0.82[CEU][hapmap];0.81[CHB][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832604	chr13:49061081-49281807	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv832605	chr13:49171305-49344970	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49251000-49257200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr13:49251400-49254600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr13:49251800-49253400	Enhancers	Spleen	Spleen
4	chr13:49251800-49256000	Enhancers	Placenta	Placenta
5	chr13:49251800-49281600	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr13:49252000-49262200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr13:49252000-49283600	Weak transcription	Primary T cells from cord blood	blood
8	chr13:49252200-49256200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr13:49252400-49253200	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr13:49252600-49253200	Enhancers	Primary B cells from cord blood	blood
11	chr13:49252600-49254600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr13:49252800-49253200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
13	chr13:49252800-49253200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr13:49252800-49258200	Weak transcription	Dnd41	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links